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KU253712.1__AMB18629.1__Eldridge_046__00046

Bact-Vir

KU253712.1__AMB18629.1__Eldridge_046__00046

Identity

Accession:
KU253712 ↗
Kingdom:
phage

Quality

90.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-82
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yzcA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.62 50.0 3.44e-01 88.7% 45.6%
1ekeA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 55.0 4.30e-01 100.0% 68.4%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.60 34.0 4.34e-01 81.2% 100.0%
4py5A02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 52.0 3.97e-01 100.0% 58.5%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.59 34.0 3.42e-01 78.8% 54.2%
2yh9B00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.59 32.0 3.40e-01 78.8% 58.8%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 33.0 3.23e-01 80.0% 49.4%
3vn5A02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 51.0 3.96e-01 100.0% 58.1%
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 37.0 3.47e-01 100.0% 53.8%
1jpdX01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 39.0 3.71e-01 81.2% 76.8%
5b3pA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.52 43.0 3.65e-01 100.0% 53.7%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 33.0 2.82e-01 86.3% 37.4%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.51 40.0 3.42e-01 97.5% 51.5%
4n4rB00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.51 40.0 3.29e-01 97.5% 45.0%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.51 34.0 3.49e-01 92.5% 72.7%
2iewB00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.51 43.0 3.11e-01 100.0% 76.2%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 43.0 3.76e-01 96.2% 71.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4110452 222.1.1.9 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.59 36.0 2.87e-01 98.8% 29.1%
4975985 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.58 36.0 3.26e-01 82.5% 45.5%
3781413 11.1.1.626 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Bul1_N 0.57 44.0 3.06e-01 83.7% 76.4%
3344144 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 42.0 4.17e-01 100.0% 76.2%
3215607 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 3.45e-01 87.5% 64.7%
3220492 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 3.51e-01 88.7% 73.8%
4629438 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.52 42.0 3.91e-01 92.5% 96.4%
3475659 2003.6.1.5 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.52 37.0 2.81e-01 76.2% 68.1%
3482747 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.52 42.0 3.84e-01 97.5% 99.2%
4304410 220.1.1.9 beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.51 46.0 3.39e-01 100.0% 49.3%
5061278 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 47.0 4.10e-01 100.0% 87.8%
D2 high residues 97-189
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3onkA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 46.0 4.05e-01 83.9% 64.2%
4gzcA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 45.0 4.04e-01 83.9% 65.9%
1rvkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 40.0 3.72e-01 87.1% 64.7%
3pfmA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.53 40.0 3.02e-01 82.8% 42.4%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.51 38.0 2.98e-01 92.5% 37.1%
4urjD00 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.51 36.0 3.02e-01 82.8% 39.7%
2anvA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.51 39.0 3.39e-01 81.7% 100.0%
1jr7A00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.51 39.0 2.84e-01 84.9% 93.1%
6zhhA01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.51 40.0 3.25e-01 84.9% 82.2%
7wu1A01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.51 39.0 3.14e-01 84.9% 52.5%
3kptA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.66e-01 81.7% 85.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3173100 109.4.1.21 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ENTH 0.59 46.0 3.53e-01 84.9% 41.4%
3305568 109.4.1.21 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ENTH 0.57 45.0 3.76e-01 84.9% 57.5%
3224877 109.4.1.21 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ENTH 0.56 43.0 3.55e-01 84.9% 62.8%
4093401 4187.2.1.1 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.56 30.0 2.99e-01 74.2% 47.4%
4932593 4076.3.1.5 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.55 28.0 3.39e-01 92.5% 82.0%
None 0.55 41.0 2.69e-01 79.6% 72.3%
4941835 4076.3.1.5 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.54 27.0 3.18e-01 88.2% 66.7%
3788612 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.54 46.0 2.98e-01 98.9% 28.9%
4027026 11.1.1.851 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26192 0.53 43.0 3.64e-01 89.2% 80.6%
3702758 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 45.0 3.59e-01 98.9% 72.4%
3781904 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 43.0 3.49e-01 94.6% 58.0%
4993373 4076.3.1.5 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.52 26.0 3.05e-01 84.9% 66.7%
4953970 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.52e-01 79.6% 91.7%
3785604 109.4.1.1286 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_12 0.51 42.0 2.91e-01 91.4% 28.5%
D3 high residues 198-269
PDB
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4k35A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.62 46.0 3.42e-01 80.6% 82.4%
4ntqA00 3.10.380.20 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Novel toxin 21 (CdiA), C-terminal domain 0.58 37.0 3.63e-01 72.2% 60.5%
4obiA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.57 44.0 4.15e-01 84.7% 83.9%
2p39A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 41.0 3.35e-01 77.8% 88.0%
1fsuA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 39.0 3.51e-01 76.4% 73.1%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.55 44.0 3.89e-01 91.7% 79.5%
1m1hA02 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.55 43.0 4.15e-01 86.1% 84.1%
4ktpB02 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.54 40.0 3.87e-01 80.6% 93.9%
2qzuA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 36.0 3.40e-01 72.2% 57.6%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.65e-01 88.9% 83.8%
2gkpA00 3.40.1590.10 Alpha Beta › 3-Layer(aba) Sandwich › NMB0488-like fold › NMB0488-like 0.52 39.0 3.09e-01 81.9% 92.6%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.51e-01 88.9% 79.5%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 43.0 3.71e-01 95.8% 92.6%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 42.0 3.73e-01 95.8% 97.4%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.43e-01 88.9% 72.7%
3vsmA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.50 37.0 2.45e-01 80.6% 26.5%
7qs4A01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.50 42.0 3.30e-01 100.0% 87.2%
2wy3B00 2.60.40.1990 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 42.0 3.53e-01 100.0% 70.1%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
165398 7515.1.1.2 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.55 42.0 2.59e-01 83.3% 78.9%
3571085 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.67e-01 88.9% 97.6%
3901670 5.1.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.54 42.0 2.99e-01 84.7% 89.8%
3860723 633.23.1.33 alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin, GSG-1 0.54 43.0 3.12e-01 88.9% 64.8%
3480627 59.1.3.0 beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains 0.53 37.0 3.61e-01 73.6% 83.7%
3955351 12.6.1.1 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C 0.53 36.0 3.88e-01 73.6% 100.0%
3939762 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 42.0 3.70e-01 88.9% 82.7%
3657657 1.1.1.10 beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_N 0.52 38.0 3.17e-01 79.2% 82.2%
3324457 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 40.0 2.47e-01 86.1% 58.4%
3555634 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.51 42.0 3.42e-01 91.7% 66.9%
3913573 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.51 41.0 3.52e-01 88.9% 78.3%
3727633 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.51 35.0 2.25e-01 75.0% 59.9%
3868717 220.1.1.173 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERK 0.51 40.0 3.46e-01 88.9% 90.8%
3520218 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 39.0 3.43e-01 88.9% 84.2%
3487225 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.34e-01 90.3% 68.6%
3617118 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.50 39.0 3.41e-01 87.5% 86.7%
4078826 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 40.0 3.39e-01 88.9% 80.0%
3524525 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.50 40.0 2.90e-01 88.9% 67.7%
3407222 633.23.1.17 alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA 0.50 41.0 2.87e-01 91.7% 67.2%
4424238 220.1.1.127 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_GEF_YEL1 0.50 40.0 3.21e-01 90.3% 66.5%
3416287 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 39.0 3.29e-01 88.9% 79.0%
3397253 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 40.0 3.07e-01 90.3% 54.4%
3515632 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 36.0 3.10e-01 77.8% 75.0%
4019606 220.1.1.63 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NF1 0.50 39.0 3.45e-01 88.9% 81.7%
3520566 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.50 40.0 3.10e-01 90.3% 67.4%
3178383 220.1.1.89 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_4 0.50 40.0 3.01e-01 91.7% 68.7%
3391824 220.1.1.60 beta barrels › PH domain-like › PH domain-like › PH domain-like › ECT2_PH 0.50 40.0 3.24e-01 88.9% 72.4%