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KU253712.1__AMB18695.1__Eldridge_0115__00112

Bact-Vir

KU253712.1__AMB18695.1__Eldridge_0115__00112

Identity

Accession:
KU253712 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-60
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.78 54.0 4.28e-01 79.3% 36.8%
1u00A02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.77 61.0 5.06e-01 84.5% 65.6%
1knzA01 6.10.280.20 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain 0.76 65.0 5.38e-01 94.8% 57.8%
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.75 54.0 5.41e-01 75.9% 74.6%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 61.0 5.61e-01 86.2% 86.1%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.73 50.0 4.72e-01 72.4% 64.8%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.73 53.0 4.52e-01 79.3% 47.9%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.72 58.0 5.27e-01 86.2% 70.1%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 62.0 5.18e-01 98.3% 100.0%
1hlvA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 50.0 4.97e-01 74.1% 70.0%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.72 59.0 4.37e-01 91.4% 35.4%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 52.0 4.44e-01 79.3% 57.4%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.71 54.0 4.15e-01 82.8% 73.8%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.70 51.0 4.41e-01 79.3% 51.1%
4me9B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.69 56.0 3.95e-01 91.4% 32.8%
2db7A01 6.10.250.980 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.69 53.0 5.47e-01 86.2% 98.1%
3wctD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.68 49.0 3.70e-01 94.8% 30.6%
3mvpA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.68 53.0 4.01e-01 86.2% 36.2%
1t33A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.68 58.0 4.30e-01 100.0% 38.6%
4lunU00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 52.0 3.24e-01 86.2% 15.8%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.66 55.0 4.37e-01 91.4% 70.3%
1xfiA02 1.20.1700.10 Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like 0.66 55.0 4.79e-01 93.1% 60.0%
1r4gA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.65 44.0 4.61e-01 100.0% 77.4%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.65 55.0 4.69e-01 91.4% 68.1%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.65 48.0 4.14e-01 79.3% 54.4%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.64 47.0 4.71e-01 79.3% 76.7%
3swhA01 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.64 53.0 3.96e-01 100.0% 35.2%
1a7eA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.64 49.0 3.96e-01 86.2% 50.0%
3jcuZ00 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.63 46.0 4.62e-01 79.3% 78.7%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.63 52.0 4.65e-01 91.4% 64.2%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 50.0 4.89e-01 86.2% 82.3%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 53.0 4.93e-01 93.1% 89.0%
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.62 48.0 5.22e-01 91.4% 100.0%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.62 55.0 4.59e-01 98.3% 68.7%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.62 46.0 4.90e-01 86.2% 90.2%
3fm9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 52.0 4.68e-01 91.4% 94.9%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 48.0 4.44e-01 86.2% 84.0%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.61 52.0 4.62e-01 96.6% 66.7%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.61 46.0 4.12e-01 87.9% 57.6%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 46.0 4.41e-01 86.2% 100.0%
3e22A03 1.10.287.600 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.59 48.0 5.02e-01 89.7% 100.0%
5mmjn01 1.10.287.1480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 42.0 3.70e-01 77.6% 59.6%
3m1mA03 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.58 46.0 3.77e-01 87.9% 90.0%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.58 44.0 4.46e-01 84.5% 88.1%
1lkvX02 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.57 50.0 3.84e-01 98.3% 79.5%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.55 49.0 4.55e-01 96.6% 83.1%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.55 44.0 4.45e-01 98.3% 94.8%
2reoA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 38.0 2.80e-01 93.1% 79.7%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5077194 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.91 84.0 6.45e-01 100.0% 48.7%
4996194 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.85 71.0 6.09e-01 100.0% 58.9%
3958634 5067.1.1.4 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL 0.84 76.0 5.12e-01 100.0% 29.5%
4075542 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.83 74.0 5.71e-01 100.0% 47.2%
4079949 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.82 71.0 4.51e-01 100.0% 21.2%
3585753 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.80 66.0 5.66e-01 89.7% 63.3%
3982421 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.79 48.0 4.36e-01 77.6% 48.0%
4216519 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.79 67.0 4.28e-01 100.0% 20.8%
4353218 605.1.1.167 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PKK 0.78 69.0 6.40e-01 100.0% 81.3%
4547274 3714.1.1.0 a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.78 69.0 5.74e-01 98.3% 59.0%
3588113 5042.1.1.1 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA 0.77 65.0 6.35e-01 96.6% 100.0%
3512559 192.1.1.37 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF7753 0.77 67.0 6.48e-01 100.0% 95.4%
None 0.76 60.0 3.81e-01 100.0% 18.5%
4286282 507.1.1.1 alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB 0.74 65.0 4.73e-01 100.0% 36.9%
1675309 601.51.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin › Flagellin_N 0.73 59.0 4.87e-01 86.2% 53.0%
3973994 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.73 60.0 5.50e-01 91.4% 69.3%
3906467 1008.1.1.106 alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › CSN5_C 0.72 54.0 4.63e-01 79.3% 54.4%
4029754 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.72 63.0 5.60e-01 100.0% 69.4%
4951992 5041.1.1.55 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › DUF1622 0.72 59.0 4.89e-01 91.4% 52.0%
3424167 3826.1.1.84 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF7797 0.72 57.0 5.03e-01 84.5% 65.0%
3297770 622.4.1.26 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › HisKA 0.71 54.0 4.72e-01 81.0% 91.8%
4575830 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 62.0 3.68e-01 100.0% 57.7%
4022294 1025.1.1.0 alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain 0.69 52.0 4.34e-01 87.9% 45.7%
4564044 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.68 57.0 3.80e-01 100.0% 22.3%
3188573 5010.1.1.0 extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV 0.68 58.0 5.77e-01 98.3% 91.7%
3805780 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.68 57.0 3.84e-01 96.6% 68.7%
3268434 207.1.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.66 56.0 3.25e-01 100.0% 10.0%
4937584 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.66 56.0 5.22e-01 100.0% 90.7%
4247116 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.66 53.0 4.26e-01 86.2% 47.3%
4240705 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.66 58.0 5.08e-01 96.6% 75.3%
3832044 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.66 54.0 4.34e-01 91.4% 76.5%
4934293 4993.1.1.0 extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit 0.65 51.0 4.59e-01 87.9% 62.5%
5083838 3896.1.1.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.65 51.0 3.56e-01 93.1% 72.5%
5069130 6026.1.1.0 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.64 49.0 5.10e-01 86.2% 100.0%
4219465 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.64 54.0 4.34e-01 93.1% 59.1%
4102446 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.63 49.0 3.40e-01 86.2% 25.4%
4385742 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.63 58.0 4.95e-01 100.0% 64.4%
3389960 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.63 49.0 4.33e-01 84.5% 58.8%
4449117 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.63 50.0 4.55e-01 93.1% 65.0%
3690556 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.61 50.0 5.02e-01 93.1% 91.7%
4626953 604.5.1.3 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ArAE_1_C 0.61 52.0 4.47e-01 100.0% 60.0%
5041261 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.61 53.0 4.04e-01 98.3% 50.4%
4080125 616.1.1.45 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › MIS13 0.61 51.0 4.70e-01 100.0% 76.2%
3449084 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.60 52.0 4.32e-01 98.3% 68.6%
3488979 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.60 51.0 3.95e-01 93.1% 43.2%
4026081 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 45.0 2.92e-01 79.3% 19.6%
3282043 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.60 53.0 4.72e-01 100.0% 81.2%
4890998 148.1.3.28 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_11 0.59 51.0 3.26e-01 98.3% 19.8%
4529629 109.4.1.549 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAPS 0.59 42.0 2.61e-01 79.3% 12.4%
3480097 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 46.0 4.33e-01 84.5% 84.3%
3685099 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.57 48.0 4.69e-01 98.3% 100.0%
3989094 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.54 46.0 4.42e-01 98.3% 82.9%