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KU517658.1__AMB17415.1__HMT_3__00003

Bact-Vir

KU517658.1__AMB17415.1__HMT_3__00003

Identity

Accession:
KU517658 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_HM_T

TaxID: 1779843

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-163_284-310
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF15931.11 best DUF4747 28.8 1.00e-06 73.4% 49.5%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.65 41.0 3.82e-01 100.0% 49.0%
1mwqA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.58 32.0 4.25e-01 97.9% 100.0%
2rckA01 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.53 38.0 3.69e-01 72.9% 94.0%
2ebeA00 3.30.70.2290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF3208) 0.52 29.0 3.77e-01 84.6% 95.3%
5oj2B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 26.0 3.41e-01 84.6% 89.6%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.51 36.0 3.82e-01 72.9% 87.2%
3qt2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 26.0 3.18e-01 87.2% 77.0%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075730 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.65 39.0 4.83e-01 84.0% 96.5%
5043905 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.61 57.0 5.39e-01 99.5% 99.1%
5036533 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.60 57.0 5.34e-01 100.0% 98.2%
4955607 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.60 53.0 5.06e-01 92.6% 100.0%
5055337 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.59 38.0 4.09e-01 99.5% 74.4%
5038450 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.59 55.0 4.83e-01 100.0% 97.4%
5071965 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.54 28.0 3.70e-01 81.4% 94.7%
167189 883.1.1.3 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP 0.53 38.0 3.67e-01 72.9% 92.8%
5060622 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 28.0 3.56e-01 87.8% 88.6%
139113 883.1.1.3 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP 0.52 38.0 3.57e-01 73.4% 87.2%
D2 high residues 169-278
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.68 40.0 4.99e-01 94.5% 98.5%
1vajA02 3.30.1490.150 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Hypothetical protein ph0010; domain 2 0.62 38.0 4.48e-01 93.6% 90.5%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 38.0 3.97e-01 95.5% 81.6%
3gqcC04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 43.0 4.20e-01 95.5% 80.0%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 4.03e-01 81.8% 89.9%
2ygrA03 3.30.190.20 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribosomal protein L1/L10, rRNA-binding domain 0.52 46.0 4.58e-01 100.0% 94.8%
1t8rA01 3.30.1730.10 Alpha Beta › 2-Layer Sandwich › amp nucleosidase, domain 1 › AMP nucleoside phosphorylase, N-terminal domain 0.51 45.0 4.03e-01 95.5% 74.8%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.51 45.0 4.16e-01 96.4% 97.1%
1tzdA00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.51 46.0 3.56e-01 100.0% 79.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4965849 3435.1.1.9 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF4747 0.62 49.0 3.73e-01 98.2% 36.5%
3982100 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.57 42.0 3.88e-01 96.4% 58.7%
4947741 821.1.1.17 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 0.54 32.0 3.59e-01 94.5% 75.3%
4466946 3325.1.1.0 ↗ a+b two layers › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA 0.52 47.0 4.64e-01 100.0% 95.7%
3431546 213.1.1.51 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FemAB_like 0.51 38.0 2.64e-01 79.1% 55.2%
3744247 101.1.11.112 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › SGT1 0.50 41.0 3.40e-01 88.2% 61.5%