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KU517658.1__AMB17435.1__HMT_23__00023
Bact-VirKU517658.1__AMB17435.1__HMT_23__00023
Identity
- Accession:
- KU517658 ↗
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-94
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7kcgA01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.56 | 42.0 | 3.74e-01 | 80.2% | 85.7% |
| 4gp3A03 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.54 | 41.0 | 3.74e-01 | 81.3% | 69.7% |
| 4gp0B02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.53 | 40.0 | 3.63e-01 | 93.4% | 60.2% |
| 2c9wA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 35.0 | 3.34e-01 | 70.3% | 92.0% |
| 2g8sB00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.52 | 45.0 | 3.10e-01 | 100.0% | 74.6% |
| 6i18A04 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 38.0 | 3.62e-01 | 93.4% | 67.3% |
| 1kb0A01 | 2.140.10.10 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily | 0.51 | 43.0 | 2.74e-01 | 100.0% | 63.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3247469 | 220.1.1.161 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 | 0.74 | 39.0 | 3.44e-01 | 100.0% | 36.8% |
| 4573891 | 6.1.1.11 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin | 0.57 | 42.0 | 3.83e-01 | 78.0% | 91.2% |
| 4042380 | 4071.1.1.1 ↗ | beta barrels › BH3618-like › BH3618-like › BH3618-like › FliW | 0.54 | 36.0 | 3.19e-01 | 70.3% | 76.4% |
| 4048741 | 375.1.1.14 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L32p | 0.53 | 25.0 | 2.91e-01 | 81.3% | 61.5% |
| 4004052 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 44.0 | 3.21e-01 | 97.8% | 55.5% |
| 154175 | 6.1.1.11 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin | 0.52 | 39.0 | 3.49e-01 | 81.3% | 61.5% |
| 4452140 | 6.1.1.11 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin | 0.52 | 38.0 | 3.59e-01 | 80.2% | 69.6% |
| 3520852 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.52 | 31.0 | 2.63e-01 | 100.0% | 35.3% |
| 3659514 | 6.1.1.34 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › DUF7910 | 0.51 | 43.0 | 3.78e-01 | 92.3% | 71.1% |
| 3567958 | 6.1.1.11 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin | 0.51 | 40.0 | 3.62e-01 | 94.5% | 63.3% |
| 3390289 | 6.1.1.11 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin | 0.50 | 38.0 | 3.39e-01 | 81.3% | 90.8% |
D2
high
residues 124-298
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5g5tA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.68 | 50.0 | 5.19e-01 | 99.4% | 82.0% |
| 5awhA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 52.0 | 5.22e-01 | 96.6% | 84.9% |
| 1gzhD02 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.59 | 32.0 | 3.80e-01 | 93.7% | 75.6% |
| 1itzA03 | 3.40.50.920 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 39.0 | 4.51e-01 | 94.3% | 93.7% |
| 4xijA01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.58 | 38.0 | 4.31e-01 | 94.9% | 88.4% |
| 3p24C02 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.57 | 52.0 | 5.02e-01 | 99.4% | 88.6% |
| 1di0A00 | 3.40.50.960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase | 0.56 | 43.0 | 4.67e-01 | 96.6% | 95.3% |
| 4yleA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 39.0 | 4.34e-01 | 96.6% | 91.2% |
| 4q9aA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.53 | 48.0 | 4.51e-01 | 99.4% | 99.1% |
| 1knxE02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 41.0 | 4.12e-01 | 97.1% | 80.6% |
| 2mr5A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 37.0 | 4.20e-01 | 94.3% | 95.6% |
| 1ryhA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 45.0 | 4.55e-01 | 96.0% | 96.5% |
| 2w9xA02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.52 | 46.0 | 4.22e-01 | 96.0% | 94.7% |
| 4dz4A00 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.51 | 45.0 | 3.72e-01 | 95.4% | 93.3% |
| 3c18A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.51 | 26.0 | 3.12e-01 | 92.0% | 71.3% |
| 2p90A01 | 3.40.50.10900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit | 0.51 | 45.0 | 4.19e-01 | 97.1% | 91.5% |
| 2yc4C00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 41.0 | 4.18e-01 | 96.0% | 87.0% |
| 1lmlA01 | 3.10.170.20 | Alpha Beta › Roll › Elastase; domain 1 › | 0.50 | 45.0 | 4.58e-01 | 97.1% | 98.8% |
| 2rauA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 44.0 | 3.55e-01 | 96.0% | 86.6% |
| 4ga4A02 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.50 | 45.0 | 3.91e-01 | 96.0% | 80.5% |
| 3qvjA00 | 3.40.50.12500 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 44.0 | 3.97e-01 | 95.4% | 86.9% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5058775 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.87 | 82.0 | 7.35e-01 | 96.0% | 80.0% |
| 1699700 | 2498.1.1.25 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M6 | 0.87 | 83.0 | 6.18e-01 | 99.4% | 70.7% |
| 5070643 | 2498.1.1.25 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M6 | 0.86 | 83.0 | 7.14e-01 | 100.0% | 73.7% |
| 5061589 | 2498.1.1.25 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M6 | 0.84 | 77.0 | 7.13e-01 | 96.6% | 78.6% |
| 5045338 | 2498.1.1.25 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M6 | 0.81 | 76.0 | 6.78e-01 | 96.0% | 75.7% |
| 5058596 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.79 | 76.0 | 6.39e-01 | 99.4% | 72.2% |
| 3639450 | 2498.1.1.25 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M6 | 0.76 | 70.0 | 5.70e-01 | 96.0% | 76.7% |
| 5027759 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.71 | 66.0 | 6.18e-01 | 96.0% | 99.0% |
| 3237561 | 7590.1.1.2 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi | 0.68 | 46.0 | 4.71e-01 | 97.1% | 70.6% |
| 4926799 | 2498.1.1.1 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M10 | 0.64 | 47.0 | 4.68e-01 | 100.0% | 71.4% |
| 3987761 | 2498.1.1.1 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M10 | 0.63 | 42.0 | 4.44e-01 | 100.0% | 75.3% |
| 3396137 | 2498.1.1.45 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Reprolysin_5 | 0.62 | 57.0 | 5.27e-01 | 96.6% | 88.8% |
| 3330279 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.62 | 58.0 | 5.12e-01 | 100.0% | 78.8% |
| 5062662 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.62 | 53.0 | 5.04e-01 | 98.3% | 77.1% |
| 4941888 | 2498.1.1.35 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M54 | 0.59 | 53.0 | 5.24e-01 | 96.0% | 100.0% |
| 4878449 | 7579.1.1.17 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S15 | 0.58 | 35.0 | 4.32e-01 | 81.1% | 99.0% |
| 185454 | 2498.1.1.45 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Reprolysin_5 | 0.57 | 53.0 | 5.07e-01 | 100.0% | 89.2% |
| 3208849 | 7579.1.1.44 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 | 0.57 | 50.0 | 4.08e-01 | 95.4% | 87.2% |
| 5004271 | 2498.1.1.1 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M10 | 0.56 | 38.0 | 4.00e-01 | 100.0% | 75.5% |
| 4889300 | 7590.1.1.0 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs | 0.55 | 49.0 | 4.48e-01 | 97.1% | 79.6% |
| 5076816 | 7592.1.1.0 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains | 0.55 | 41.0 | 4.50e-01 | 94.3% | 95.8% |
| 5048981 | 7590.1.1.0 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs | 0.54 | 49.0 | 4.65e-01 | 97.7% | 85.2% |
| 3176284 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.53 | 48.0 | 3.59e-01 | 100.0% | 70.0% |
| 4104604 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.52 | 47.0 | 4.63e-01 | 97.1% | 97.4% |
| 4135561 | 2006.1.5.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Arginase | 0.52 | 46.0 | 3.81e-01 | 95.4% | 90.3% |
| 4997942 | 2007.2.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › FMN_red | 0.52 | 46.0 | 4.38e-01 | 96.6% | 93.3% |
| 3500538 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.52 | 35.0 | 3.87e-01 | 80.0% | 85.5% |
| 153424 | 7553.1.1.1 ↗ | a/b three-layered sandwiches › Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) › Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) › Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) › DBI_PRT | 0.52 | 46.0 | 3.83e-01 | 100.0% | 83.2% |
| 1523484 | 7523.1.1.16 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › DctP | 0.52 | 36.0 | 4.15e-01 | 86.9% | 99.2% |
| 4958442 | 2008.1.1.51 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › McrBC | 0.51 | 41.0 | 4.14e-01 | 85.7% | 93.3% |
| 3457868 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.51 | 45.0 | 3.55e-01 | 96.0% | 69.6% |
| 4957014 | 2007.1.2.13 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 | 0.51 | 45.0 | 4.30e-01 | 97.1% | 81.5% |
| 3953121 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 40.0 | 4.34e-01 | 97.1% | 100.0% |
| 3998087 | 2004.1.1.598 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF29907 | 0.50 | 45.0 | 4.30e-01 | 96.6% | 88.0% |
| 3895899 | 2004.1.1.118 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 | 0.50 | 45.0 | 4.39e-01 | 96.0% | 96.3% |
D3
high
residues 341-494
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kxgA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 28.0 | 3.51e-01 | 94.8% | 88.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5068850 | 5090.2.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Immune inhibitor A metallopeptidase C-terminal domain › Immune inhibitor A metallopeptidase C-terminal domain | 0.91 | 80.0 | 8.37e-01 | 95.5% | 98.6% |
| 5058597 | 5090.2.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Immune inhibitor A metallopeptidase C-terminal domain › Immune inhibitor A metallopeptidase C-terminal domain | 0.91 | 83.0 | 8.06e-01 | 93.5% | 96.4% |
| 5061590 | 5090.2.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Immune inhibitor A metallopeptidase C-terminal domain › Immune inhibitor A metallopeptidase C-terminal domain | 0.82 | 73.0 | 7.56e-01 | 93.5% | 98.6% |
| 5071885 | 5090.2.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Immune inhibitor A metallopeptidase C-terminal domain › Immune inhibitor A metallopeptidase C-terminal domain | 0.76 | 64.0 | 6.72e-01 | 94.8% | 96.4% |
| 4002697 | 5090.2.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Immune inhibitor A metallopeptidase C-terminal domain › Immune inhibitor A metallopeptidase C-terminal domain | 0.71 | 63.0 | 6.17e-01 | 100.0% | 86.2% |
| 3643884 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.51 | 27.0 | 3.22e-01 | 76.6% | 75.0% |
| 3657993 | 274.1.1.57 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › Det1 | 0.51 | 26.0 | 3.45e-01 | 77.3% | 89.4% |