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KU574722.1__AMM43703.1__CBB_138__00138

Bact-Vir

KU574722.1__AMM43703.1__CBB_138__00138

Identity

Accession:
KU574722 ↗
Kingdom:
phage

Quality

83.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-81
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2juaA00 1.20.1480.30 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Designed four-helix bundle protein 0.76 68.0 6.20e-01 100.0% 82.4%
3a7kB00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.75 67.0 4.66e-01 100.0% 59.7%
2h7oA01 1.20.120.1330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Rac1-binding domain, N-terminal GTPase binding subdomain 0.74 59.0 4.99e-01 84.6% 55.3%
1op1A00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.71 55.0 5.43e-01 83.3% 90.2%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.71 56.0 5.64e-01 100.0% 87.2%
4dhiB02 1.20.1300.20 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 0.70 57.0 4.72e-01 92.3% 79.3%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.67 58.0 5.41e-01 100.0% 84.3%
2c2jA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.67 49.0 3.86e-01 76.9% 80.6%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.66 46.0 5.17e-01 80.8% 100.0%
3cazB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.66 47.0 3.47e-01 75.6% 76.2%
1v9vA01 1.20.1480.20 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like 0.65 57.0 5.37e-01 100.0% 85.3%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.65 57.0 4.58e-01 97.4% 96.1%
2vzbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.65 54.0 4.29e-01 94.9% 88.6%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.64 47.0 4.32e-01 84.6% 60.0%
1z72A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.64 53.0 3.85e-01 92.3% 69.0%
2j9wB00 1.20.120.1130 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain 0.63 48.0 4.48e-01 83.3% 82.8%
3b0xA01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.62 46.0 4.47e-01 78.2% 90.8%
2wyhB04 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.61 44.0 4.14e-01 78.2% 74.3%
1nigA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.61 50.0 4.18e-01 93.6% 90.4%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.60 47.0 4.04e-01 87.2% 85.0%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.60 45.0 4.09e-01 82.1% 83.2%
3f4sA02 1.10.40.80 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › 0.58 42.0 4.65e-01 85.9% 93.8%
1z82B02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.58 50.0 4.20e-01 98.7% 85.5%
5n17A01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.58 52.0 4.70e-01 100.0% 80.8%
3iu5A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.58 51.0 4.55e-01 100.0% 71.9%
4m0mA04 1.20.1270.440 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 49.0 4.41e-01 100.0% 88.0%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.57 46.0 4.18e-01 91.0% 94.5%
4fx0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.77e-01 83.3% 85.2%
3fvvA02 1.20.1440.100 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function 0.56 43.0 4.44e-01 84.6% 89.3%
6i3mE01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.56 47.0 3.95e-01 93.6% 54.7%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.56 46.0 4.47e-01 98.7% 81.1%
2kobA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.56 50.0 4.74e-01 100.0% 94.6%
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 38.0 3.75e-01 96.2% 65.1%
3f2eA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 47.0 4.69e-01 100.0% 90.4%
1yt3A02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.55 42.0 3.96e-01 98.7% 66.7%
3tahA02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 43.0 4.14e-01 83.3% 85.2%
1kn1B00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.55 45.0 3.66e-01 94.9% 65.2%
2ivxB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 48.0 4.25e-01 100.0% 77.4%
1bgpA01 1.10.520.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › 0.54 46.0 3.78e-01 100.0% 78.3%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 46.0 4.59e-01 98.7% 97.6%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 47.0 4.32e-01 100.0% 82.5%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 41.0 3.79e-01 88.5% 88.1%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 47.0 4.17e-01 100.0% 84.8%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 46.0 4.40e-01 100.0% 91.5%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.52 42.0 4.28e-01 97.4% 91.0%
1ynbA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.52 44.0 3.55e-01 97.4% 73.7%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 44.0 4.10e-01 98.7% 80.4%
2rfqB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.52 42.0 3.87e-01 93.6% 72.5%
3q2eA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.51 43.0 4.01e-01 100.0% 74.8%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.50 34.0 3.62e-01 78.2% 83.6%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3279186 7579.1.1.102 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, Hydrolase_4 0.68 51.0 3.33e-01 100.0% 18.9%
5072615 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.67 47.0 4.21e-01 73.1% 59.1%
5074726 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.66 54.0 5.30e-01 100.0% 84.7%
4209288 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.65 50.0 4.42e-01 83.3% 58.3%
3236455 3470.1.1.35 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF19 0.65 56.0 4.30e-01 100.0% 91.6%
3276902 109.4.1.1224 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_DOCK9 0.63 47.0 3.30e-01 82.1% 56.3%
3571190 109.25.1.7 alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › PF26588 0.62 46.0 4.08e-01 82.1% 53.0%
4969225 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.62 54.0 4.77e-01 94.9% 83.6%
5053558 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.62 53.0 4.47e-01 100.0% 94.3%
3507458 109.24.1.0 alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9 0.62 47.0 4.52e-01 83.3% 75.6%
3937037 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 45.0 3.43e-01 80.8% 32.0%
3625186 627.1.1.2 alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › DUF5601 0.61 53.0 4.96e-01 100.0% 93.0%
4396981 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.61 53.0 4.89e-01 96.2% 90.0%
3945277 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.60 50.0 4.56e-01 91.0% 80.0%
4997481 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.60 54.0 4.98e-01 100.0% 81.0%
4011398 633.24.1.0 alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain 0.60 47.0 4.60e-01 87.2% 83.5%
396152 4009.1.1.3 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › KTI12 0.59 37.0 3.83e-01 96.2% 66.7%
3959695 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.58 43.0 3.61e-01 80.8% 73.1%
3482273 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.58 45.0 4.12e-01 87.2% 99.1%
5028331 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.58 49.0 4.64e-01 94.9% 88.4%
3175946 101.1.1.122 alpha arrays › HTH › HTH › Three-helical HTH › DUP 0.58 38.0 3.47e-01 94.9% 50.5%
3261117 633.24.1.2 alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 0.57 49.0 4.69e-01 98.7% 86.3%
5030306 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.57 49.0 4.66e-01 96.2% 89.5%
4285178 578.1.1.1 alpha arrays › YcfC-like › YcfC-like › YcfC-like › DUF489 0.57 48.0 3.67e-01 98.7% 80.0%
3738459 6088.1.1.1 alpha arrays › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › 4HB 0.56 45.0 4.55e-01 98.7% 87.5%
3393634 592.6.1.2 alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › PF26582 0.56 41.0 3.84e-01 97.4% 61.0%
5012706 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.55 42.0 3.76e-01 84.6% 76.5%
4180109 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.55 39.0 3.81e-01 88.5% 66.7%
3480799 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.54 49.0 4.10e-01 100.0% 78.5%
4216505 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.54 42.0 2.99e-01 85.9% 50.8%
4928737 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.54 44.0 4.12e-01 88.5% 80.0%
1097270 633.19.1.1 alpha bundles › Bromodomain-like › Hypothetical protein lpg2422 helical bundle domain › Hypothetical protein lpg2422 helical bundle domain › DUF6842 0.54 45.0 4.20e-01 100.0% 87.0%
4941369 3651.1.1.1 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.54 44.0 4.06e-01 92.3% 69.5%
3268808 609.1.1.1 alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › PARP_reg 0.54 45.0 3.82e-01 94.9% 61.5%
4938333 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.54 47.0 3.64e-01 100.0% 68.6%
3991144 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.53 39.0 3.79e-01 94.9% 68.9%
3532105 592.2.1.2 alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.53 44.0 3.93e-01 100.0% 64.8%
5076000 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.53 37.0 3.92e-01 75.6% 87.1%
3268175 198.1.1.3 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.52 36.0 3.70e-01 74.4% 74.7%
3288536 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.51 35.0 3.37e-01 70.5% 67.8%
4107135 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.51 41.0 3.75e-01 93.6% 67.0%
3997639 7563.1.1.0 a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related 0.51 42.0 2.93e-01 98.7% 35.2%