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KU574722.1__AMM43958.1__CBB_395__00395

Bact-Vir

KU574722.1__AMM43958.1__CBB_395__00395

Identity

Accession:
KU574722 ↗
Kingdom:
phage

Quality

82.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-52
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z4vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.77 67.0 3.89e-01 100.0% 12.2%
3dnsA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.72 48.0 3.51e-01 95.9% 26.0%
1e8uA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.71 61.0 3.56e-01 100.0% 14.8%
3e8tA00 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.70 59.0 3.93e-01 100.0% 60.2%
5x7qA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.69 57.0 3.64e-01 100.0% 19.5%
6em3x01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.68 56.0 3.81e-01 93.9% 63.8%
2rprA00 2.20.25.240 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 48.0 3.98e-01 100.0% 43.7%
1x23B00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.65 54.0 3.95e-01 100.0% 85.5%
4r62A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.65 53.0 3.87e-01 98.0% 85.9%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 54.0 3.90e-01 98.0% 51.3%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.64 57.0 3.75e-01 100.0% 37.3%
3mcbB00 2.20.70.30 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain 0.61 46.0 4.37e-01 85.7% 69.0%
2gqrA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 56.0 4.35e-01 100.0% 79.0%
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.59 40.0 3.93e-01 73.5% 82.5%
1h4uA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.59 51.0 3.27e-01 100.0% 52.2%
4bh5A00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.59 49.0 3.61e-01 93.9% 50.8%
1qs1A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.58 46.0 3.23e-01 98.0% 76.8%
1aq3A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.58 47.0 3.64e-01 100.0% 51.2%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.27e-01 93.9% 71.4%
1nh2D02 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.58 44.0 4.51e-01 87.8% 83.3%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.08e-01 91.8% 68.1%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 50.0 4.14e-01 100.0% 55.7%
1qs1A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.57 45.0 3.17e-01 100.0% 76.6%
4lrjA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 49.0 4.32e-01 100.0% 93.2%
2f4wB00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 45.0 3.36e-01 100.0% 71.1%
6qdws00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.56 39.0 3.23e-01 79.6% 85.3%
1o75A02 2.30.30.470 Mainly Beta › Roll › SH3 type barrels. › Penicillin-binding protein Tp47, domain B 0.56 43.0 3.53e-01 93.9% 75.0%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.55 38.0 3.35e-01 81.6% 42.9%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 43.0 3.20e-01 89.8% 74.6%
2icsA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.55 41.0 3.49e-01 91.8% 85.1%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.55 44.0 3.74e-01 91.8% 71.4%
1zldA00 2.60.40.1920 Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA 0.55 43.0 3.53e-01 93.9% 73.5%
4hikA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 47.0 3.45e-01 100.0% 59.4%
5xukA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.54 42.0 3.40e-01 93.9% 44.3%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.20e-01 89.8% 50.0%
1f0lA03 2.60.40.700 Mainly Beta › Sandwich › Immunoglobulin-like › Diphtheria toxin, receptor-binding domain 0.53 44.0 3.23e-01 100.0% 68.2%
3d89A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 44.0 3.33e-01 98.0% 67.6%
1vwxg01 6.20.370.70 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.53 34.0 3.63e-01 91.8% 75.7%
1v9kA00 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.53 40.0 2.62e-01 83.7% 36.1%
1iyjB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 3.27e-01 91.8% 88.6%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.52 40.0 3.21e-01 100.0% 50.4%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 41.0 3.23e-01 91.8% 88.6%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.52 39.0 2.73e-01 83.7% 28.7%
2bddA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.51 40.0 3.23e-01 100.0% 44.1%
2ogjA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.50 38.0 3.17e-01 98.0% 79.1%
4twbA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 40.0 2.79e-01 87.8% 51.3%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4351646 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.74 63.0 4.30e-01 100.0% 29.7%
5029394 209.1.1.0 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.72 57.0 3.73e-01 89.8% 50.7%
3781750 9.2.1.3 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C 0.71 60.0 4.00e-01 100.0% 26.2%
3936956 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.70 58.0 4.55e-01 95.9% 76.4%
3499540 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.70 57.0 4.07e-01 95.9% 56.2%
3634085 2005.1.1.16 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Diphthami_syn_2 0.69 61.0 3.70e-01 100.0% 91.1%
4828612 2.1.1.29 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep-A_N 0.67 56.0 4.17e-01 95.9% 76.9%
4220176 2.1.1.289 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon, Rep-A_N 0.66 55.0 3.49e-01 95.9% 37.4%
3747587 239.3.1.0 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.66 51.0 3.97e-01 95.9% 37.5%
3812180 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.65 52.0 3.39e-01 91.8% 49.4%
3960589 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 51.0 4.12e-01 100.0% 56.7%
3368618 5.1.3.151 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.65 54.0 3.17e-01 100.0% 12.2%
4644110 11.1.1.1197 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3281 0.65 51.0 3.79e-01 85.7% 60.0%
5041943 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 53.0 4.42e-01 89.8% 96.5%
4407404 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.65 51.0 3.81e-01 89.8% 47.7%
None 0.64 51.0 3.28e-01 100.0% 17.6%
3787279 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.64 53.0 3.36e-01 100.0% 26.8%
3614430 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 53.0 3.78e-01 95.9% 72.5%
4943742 2484.1.1.232 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › EutA 0.63 45.0 3.49e-01 77.6% 35.0%
4453471 56.1.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.63 54.0 4.51e-01 95.9% 81.2%
1144813 4.1.1.107 beta barrels › SH3 › SH3 › SH3 › XRN1_D1 0.63 51.0 3.63e-01 100.0% 57.6%
3303657 2.1.1.284 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3, CDC24_OB1 0.63 48.0 3.27e-01 87.8% 51.7%
4001347 220.4.1.0 beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.62 53.0 3.99e-01 93.9% 41.7%
3421076 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.61 50.0 3.15e-01 95.9% 18.4%
5046451 139.2.1.0 few secondary structure elements › Multiheme cytochromes › Di-heme elbow motif › Di-heme elbow motif 0.61 52.0 3.30e-01 100.0% 47.5%
3859965 4.1.1.107 beta barrels › SH3 › SH3 › SH3 › XRN1_D1 0.61 49.0 3.45e-01 100.0% 63.7%
4416487 206.1.2.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt 0.61 56.0 3.52e-01 100.0% 33.6%
3267858 389.1.1.49 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_Teneurin 0.61 33.0 3.10e-01 73.5% 35.0%
3978255 3523.1.1.0 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.60 49.0 3.95e-01 95.9% 55.2%
4948168 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 46.0 3.68e-01 89.8% 92.7%
3598052 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 41.0 3.38e-01 85.7% 40.0%
4558193 275.1.1.0 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.58 49.0 4.14e-01 100.0% 72.2%
3615383 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.58 46.0 3.38e-01 100.0% 67.4%
4085003 7026.1.1.5 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD 0.58 46.0 2.81e-01 98.0% 16.6%
3569959 4.2.1.10 beta barrels › SH3 › SAND › SAND › IRF-2BP1_2_M 0.58 43.0 3.21e-01 87.8% 28.4%
3898777 4.1.1.327 beta barrels › SH3 › SH3 › SH3 › IRF-2BP1_2_M 0.58 43.0 3.19e-01 87.8% 28.4%
3541435 271.1.1.5 beta barrels › GFP-like › GFP-like › GFP-like › G2F 0.57 49.0 3.20e-01 100.0% 57.9%
5041942 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 44.0 3.46e-01 89.8% 88.7%
3750534 2.1.1.257 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30832 0.56 50.0 3.59e-01 100.0% 60.0%
3275384 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.56 44.0 3.77e-01 93.9% 60.0%
3918889 2.1.1.257 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30832 0.55 45.0 3.40e-01 95.9% 66.2%
2319280 2.1.1.72 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1PC 0.54 48.0 3.45e-01 100.0% 58.2%
3920805 389.1.2.0 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.54 42.0 3.96e-01 91.8% 71.7%
5047682 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 40.0 3.23e-01 89.8% 85.0%
3580428 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 42.0 3.94e-01 85.7% 75.0%
5045693 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.05e-01 81.6% 64.2%
3788694 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 2.75e-01 79.6% 78.8%
3654720 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 43.0 2.55e-01 91.8% 32.8%
5036292 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 41.0 3.33e-01 91.8% 91.8%
2996613 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.52 41.0 2.62e-01 100.0% 15.6%
5047681 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 41.0 3.20e-01 91.8% 83.2%
3526388 2003.1.10.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › ATPgrasp_N 0.52 40.0 2.70e-01 87.8% 34.0%
4643232 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 38.0 3.02e-01 91.8% 98.5%
3787002 11.1.5.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.51 42.0 3.22e-01 98.0% 68.0%
3870810 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 39.0 2.10e-01 95.9% 6.3%
4975578 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.50 39.0 2.51e-01 89.8% 24.4%