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KU594606.1__AMO43078.1__R1080702_069__00063

Bact-Vir

KU594606.1__AMO43078.1__R1080702_069__00063

Identity

Accession:
KU594606 ↗
Kingdom:
phage

Quality

76.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Bristolvirus› Cyanophage_S-RIM32

TaxID: 1278479

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-37
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ubtD00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.66 46.0 2.62e-01 76.5% 6.9%
4gc1A02 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.62 42.0 3.14e-01 70.6% 23.8%
1kf6A04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.58 40.0 3.99e-01 88.2% 68.6%
2jbvA02 4.10.450.10 Few Secondary Structures › Irregular › Glucose Oxidase; domain 2 › Glucose Oxidase, domain 2 0.54 39.0 3.20e-01 85.3% 56.3%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 2.83e-01 94.1% 76.4%
3pjvD02 6.20.270.20 Special › Other non-globular › Carboxypeptidase Inhibitor; Chain A › LapD/MoxY periplasmic domain 0.52 37.0 3.51e-01 94.1% 58.0%
1vwxC01 3.40.1370.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L4; Chain: A; › Ribosomal protein L4/L1 0.51 39.0 2.39e-01 100.0% 63.4%
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.51 38.0 3.12e-01 94.1% 39.7%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.51 37.0 2.79e-01 100.0% 55.2%
3mwxA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 37.0 2.26e-01 97.1% 45.7%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.50 35.0 3.00e-01 79.4% 44.4%
3gqhA02 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.50 36.0 3.54e-01 76.5% 50.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3475930 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.67 52.0 3.18e-01 100.0% 53.8%
4977455 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 46.0 2.86e-01 94.1% 52.7%
3592958 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.63 49.0 2.90e-01 100.0% 36.8%
3743614 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.62 42.0 3.63e-01 70.6% 40.0%
3360754 2484.1.1.20 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.59 43.0 2.98e-01 88.2% 56.6%
4008273 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 39.0 3.41e-01 79.4% 38.6%
5053363 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 3.05e-01 100.0% 63.6%
4512243 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.57 40.0 3.35e-01 76.5% 41.7%
3732571 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 39.0 3.42e-01 70.6% 40.0%
3581025 376.1.2.15 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › SOS1_NGEF_PH 0.56 39.0 2.61e-01 82.4% 15.6%
3270406 12.1.1.34 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.56 39.0 3.03e-01 79.4% 27.1%
3993970 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.56 38.0 2.27e-01 97.1% 7.9%
5037168 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.56 39.0 2.93e-01 97.1% 92.0%
3261268 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.56 42.0 2.46e-01 100.0% 40.3%
4595166 5076.2.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.55 40.0 2.62e-01 100.0% 22.7%
4957877 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 38.0 3.11e-01 79.4% 34.3%
4998594 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.54 34.0 3.20e-01 85.3% 40.0%
3184150 2487.1.1.9 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cyclase 0.53 37.0 2.25e-01 97.1% 8.8%
3815772 109.4.1.1580 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N, HAT_PRP39_C 0.51 37.0 2.09e-01 100.0% 5.6%
5031087 205.1.1.16 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.51 35.0 2.76e-01 70.6% 33.3%
3238115 389.1.1.145 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF29138 0.51 35.0 3.13e-01 79.4% 43.6%