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KU640380.1__AMQ66489.1__X__00007

Bact-Vir

KU640380.1__AMQ66489.1__X__00007

Identity

Accession:
KU640380 ↗
Kingdom:
phage

Quality

79.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Shalavirus› Bacillus_phage_Shbh1

TaxID: 1796992

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-71
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.75 48.0 3.94e-01 89.7% 36.9%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.71 41.0 3.89e-01 83.8% 48.1%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 42.0 4.42e-01 91.2% 71.4%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 38.0 3.35e-01 88.2% 41.7%
1i36A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 44.0 3.91e-01 89.7% 55.6%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 45.0 4.52e-01 100.0% 82.9%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.57 50.0 4.75e-01 100.0% 87.7%
1aabA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.57 34.0 3.19e-01 76.5% 47.0%
2px7A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 43.0 3.03e-01 82.4% 49.3%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 4.31e-01 100.0% 74.4%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.55 40.0 3.06e-01 97.1% 30.3%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.55 42.0 4.29e-01 88.2% 84.8%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 47.0 4.59e-01 100.0% 85.3%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.54 41.0 3.78e-01 95.6% 61.8%
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.54 34.0 3.23e-01 88.2% 52.4%
4lunU00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 46.0 2.96e-01 97.1% 34.4%
3lapA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 4.35e-01 100.0% 91.2%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 37.0 3.40e-01 75.0% 59.8%
2v40A02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.51 42.0 3.98e-01 98.5% 95.5%
6cgvM01 1.20.120.1500 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pre-hexon-linking protein IIIa 0.51 40.0 3.27e-01 88.2% 91.8%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4279089 7094.1.1.3 ↗ alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › OPA1_C 0.80 64.0 5.21e-01 100.0% 48.3%
3994728 7094.1.1.3 ↗ alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › OPA1_C 0.80 64.0 4.95e-01 100.0% 41.4%
3870735 601.25.1.5 ↗ alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › OPA1_C 0.80 64.0 5.13e-01 100.0% 46.4%
3886268 3919.1.1.0 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.74 58.0 4.86e-01 100.0% 50.9%
3643885 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 58.0 5.84e-01 100.0% 85.7%
4957413 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.67 42.0 4.76e-01 89.7% 88.0%
4025261 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 48.0 4.19e-01 100.0% 49.1%
4567935 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 53.0 5.45e-01 95.6% 92.3%
4236132 3254.1.1.1 ↗ alpha arrays › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › FHIPEP 0.66 39.0 3.61e-01 70.6% 45.6%
3740778 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 55.0 5.36e-01 100.0% 90.7%
4175971 604.3.1.43 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › FliX 0.61 36.0 3.32e-01 88.2% 42.2%
4556778 3919.1.1.2 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.61 54.0 4.51e-01 97.1% 78.3%
4070925 4044.1.1.1 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.60 39.0 3.74e-01 88.2% 57.5%
3932050 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.58 40.0 3.50e-01 88.2% 45.5%
3411866 3919.1.1.0 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.56 49.0 4.01e-01 97.1% 75.2%
4013784 3981.1.1.2 ↗ alpha bundles › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › PANTS-like 0.55 31.0 3.00e-01 82.4% 46.3%
4024318 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 4.05e-01 100.0% 70.6%
3474099 5000.3.1.1 ↗ alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Bcl-2 0.55 45.0 3.38e-01 97.1% 36.5%
3227144 3277.2.1.1 ↗ alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C 0.55 46.0 4.05e-01 97.1% 67.6%
5030324 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.54 41.0 4.13e-01 98.5% 82.9%
3581915 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 41.0 3.63e-01 94.1% 54.5%
3631692 101.1.1.176 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DEK_C 0.51 36.0 3.82e-01 100.0% 88.3%
3735853 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.51 37.0 3.86e-01 95.6% 91.7%
3263340 592.2.1.0 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like 0.51 42.0 4.25e-01 100.0% 95.7%
D2 high residues 75-111_127-150
PDB
Domain cluster: rep: MN150686.1__QEG04229.1__X__00143__D33-90