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KU640380.1__AMQ66492.1__X__00010

Bact-Vir

KU640380.1__AMQ66492.1__X__00010

Identity

Accession:
KU640380 ↗
Kingdom:
phage

Quality

90.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Shalavirus› Bacillus_phage_Shbh1

TaxID: 1796992

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-67
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.66 41.0 4.11e-01 98.5% 58.8%
3fghA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.63 51.0 5.08e-01 93.8% 86.6%
2jrmA00 1.10.10.620 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain 0.62 36.0 3.73e-01 95.4% 60.0%
1knzA01 6.10.280.20 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain 0.62 49.0 4.23e-01 86.2% 62.7%
6tqpA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.62 47.0 3.83e-01 86.2% 100.0%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.60 39.0 3.90e-01 96.9% 65.2%
1o0wA01 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.60 46.0 3.49e-01 83.1% 95.5%
4mk6A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 43.0 3.10e-01 76.9% 53.7%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 48.0 3.61e-01 87.7% 84.0%
2eb1C00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.58 46.0 3.42e-01 86.2% 93.5%
2q9rA01 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.57 45.0 3.10e-01 83.1% 85.6%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 44.0 3.52e-01 84.6% 75.4%
5uagE00 3.90.940.10 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega 0.55 45.0 4.23e-01 100.0% 74.2%
1a3qA01 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.52 39.0 2.95e-01 84.6% 40.2%
3udcA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 40.0 3.37e-01 86.2% 80.0%
2mhhA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 44.0 3.91e-01 96.9% 74.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3259191 4995.1.1.0 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like 0.76 41.0 3.07e-01 90.8% 23.3%
3644157 148.1.3.42 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.70 41.0 4.42e-01 72.3% 69.1%
3065336 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.68 41.0 4.40e-01 76.9% 72.2%
3296868 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.64 33.0 3.38e-01 90.8% 49.2%
3248272 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 44.0 3.25e-01 73.8% 44.5%
3217198 2007.1.14.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase 0.61 52.0 3.87e-01 98.5% 43.3%
3769667 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.60 41.0 3.42e-01 87.7% 42.9%
3270778 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.60 47.0 4.06e-01 84.6% 73.0%
4544749 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 37.0 3.62e-01 70.8% 54.7%
3690980 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.59 42.0 3.69e-01 76.9% 56.2%
3599587 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 49.0 3.60e-01 98.5% 49.2%
4986010 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 3.38e-01 96.9% 43.9%
4683333 138.1.1.5 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_gamma3 0.56 39.0 3.16e-01 86.2% 39.2%
3336206 3009.2.1.1 ↗ alpha arrays › Insertion subdomain in DsbA-like › STAC domain › STAC domain › DUF3741 0.55 41.0 4.09e-01 81.5% 100.0%
4096162 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.55 45.0 3.87e-01 87.7% 87.0%
3684369 601.13.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS 0.55 39.0 3.43e-01 80.0% 70.0%
3206841 396.1.1.0 ↗ few secondary structure elements › CCHC-type 1 zinc finger › Retrovirus zinc finger-related domains › Retrovirus zinc finger-related domains 0.54 36.0 3.87e-01 73.8% 80.0%
5020872 1079.1.1.1 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DsbD 0.51 47.0 3.24e-01 100.0% 66.3%