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KU640380.1__AMQ66498.1__X__00016

Bact-Vir

KU640380.1__AMQ66498.1__X__00016

Identity

Accession:
KU640380 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Shalavirus› Bacillus_phage_Shbh1

TaxID: 1796992

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-86
PDB
Domain cluster: rep: KT895374.1__ALN97765.1__Bp8pS_086__00086__D2-83
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5u1xA02 2.60.490.10 Mainly Beta › Sandwich › atp-gated p2x4 ion channel fold › atp-gated p2x4 ion channel domain 0.61 49.0 3.40e-01 86.7% 92.0%
4f3lA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 50.0 4.43e-01 95.2% 90.2%
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.63e-01 89.2% 60.4%
3g3sA01 3.40.630.110 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › GNAT acetyltransferase-like 0.54 34.0 3.04e-01 88.0% 44.0%
3hluA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 33.0 3.47e-01 88.0% 68.5%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.54 40.0 3.51e-01 89.2% 51.1%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.53 36.0 3.08e-01 88.0% 42.3%
3gkuA01 3.30.30.80 Alpha Beta › 2-Layer Sandwich › Defensin A-like › probable RNA-binding protein from clostridium symbiosum atcc 14940 0.52 33.0 3.75e-01 95.2% 98.1%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.52 36.0 3.50e-01 90.4% 63.4%
3l4gC01 3.30.1370.240 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 39.0 3.62e-01 91.6% 62.9%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.51 35.0 3.00e-01 75.9% 42.1%
3qw9B00 2.60.40.4100 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain 0.51 39.0 3.19e-01 85.5% 50.0%
3k2yA00 3.30.70.2330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 35.0 3.39e-01 75.9% 96.1%
5a2fA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.42e-01 100.0% 58.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3598586 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.60 40.0 3.39e-01 97.6% 43.1%
4205746 242.1.1.5 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.59 41.0 3.85e-01 89.2% 57.1%
4929238 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.58 35.0 3.73e-01 79.5% 68.0%
5079012 882.1.1.4 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.57 40.0 3.37e-01 89.2% 42.1%
5046705 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.57 42.0 3.95e-01 91.6% 62.9%
5022418 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.56 33.0 3.69e-01 95.2% 75.4%
5017604 872.3.1.1 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.54 46.0 4.50e-01 94.0% 87.8%
4503821 304.12.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.53 35.0 3.76e-01 71.1% 80.0%
3656807 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 3.64e-01 72.3% 68.9%
3495445 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.52 41.0 2.63e-01 83.1% 38.7%
3670739 101.1.2.98 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1 0.52 36.0 2.94e-01 72.3% 45.6%
5061342 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.52 42.0 3.91e-01 90.4% 73.3%
3343334 101.1.2.98 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1 0.52 36.0 3.00e-01 72.3% 60.7%
3473096 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.51 42.0 3.20e-01 94.0% 80.9%
3631962 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.51 38.0 3.24e-01 78.3% 96.4%
3481119 11.12.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like 0.51 42.0 3.18e-01 94.0% 80.5%
None — 0.51 44.0 3.19e-01 100.0% 70.2%
3593916 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 45.0 3.16e-01 100.0% 78.2%
4105022 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.50 35.0 3.42e-01 71.1% 92.2%
3478013 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.50 44.0 3.09e-01 100.0% 76.9%
5082698 101.1.2.914 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.50 43.0 4.23e-01 97.6% 92.2%
4025013 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.50 44.0 3.13e-01 100.0% 43.6%
3607825 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.50 44.0 3.10e-01 100.0% 73.6%
3997414 2003.1.5.67 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 0.50 44.0 3.11e-01 100.0% 68.7%
D2 high residues 104-215
PDB
Domain cluster: rep: EU399241.1__ABY90398.1__HAPgp30__00030__D90-194
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.71 27.0 2.90e-01 79.5% 39.6%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.66 35.0 4.29e-01 96.4% 83.6%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 35.0 4.12e-01 98.2% 78.9%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 27.0 3.82e-01 81.2% 89.8%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 37.0 3.62e-01 99.1% 54.1%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.61 38.0 3.41e-01 100.0% 45.4%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 34.0 3.97e-01 99.1% 80.3%
7q61A01 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 35.0 3.56e-01 100.0% 57.8%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 31.0 3.73e-01 87.5% 76.4%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 28.0 3.60e-01 82.1% 85.2%
3bc9A01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 30.0 3.20e-01 100.0% 58.1%
3hlkA01 2.60.40.2240 Mainly Beta › Sandwich › Immunoglobulin-like › Acyl-CoA thioester hydrolase/BAAT N-terminal domain 0.56 40.0 3.82e-01 97.3% 63.0%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 34.0 2.91e-01 98.2% 37.4%
1h2cA00 2.70.20.20 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain 0.55 50.0 4.85e-01 100.0% 96.8%
4ckbD02 3.20.100.20 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › 0.55 41.0 3.37e-01 93.8% 42.9%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 30.0 3.85e-01 87.5% 96.9%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 31.0 3.39e-01 90.2% 70.3%
5z6pA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 38.0 3.33e-01 98.2% 50.6%
3dorA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.50 35.0 3.58e-01 71.4% 83.2%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3192440 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.72 38.0 3.86e-01 99.1% 52.7%
3926118 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.67 32.0 4.29e-01 83.0% 86.7%
3892842 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.66 37.0 4.64e-01 100.0% 93.8%
3220912 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.63 38.0 3.66e-01 100.0% 52.0%
5065436 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.62 35.0 4.32e-01 99.1% 95.3%
3411042 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 33.0 4.49e-01 83.9% 100.0%
3238035 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 28.0 3.99e-01 79.5% 94.0%
4373021 2.4.1.6 ↗ beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.61 28.0 3.02e-01 80.4% 48.5%
3345090 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 35.0 3.56e-01 99.1% 56.5%
4951473 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 35.0 4.32e-01 99.1% 98.4%
3290753 303.1.1.3 ↗ a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › DUF4189 0.61 38.0 3.87e-01 100.0% 62.3%
2106285 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 34.0 3.54e-01 99.1% 56.5%
4983090 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 35.0 3.94e-01 99.1% 77.2%
2527501 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 34.0 3.59e-01 99.1% 58.7%
4943401 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.60 35.0 3.95e-01 99.1% 75.3%
3259237 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.60 42.0 4.77e-01 99.1% 100.0%
1513837 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 26.0 3.40e-01 80.4% 71.7%
3654790 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 28.0 3.70e-01 79.5% 83.3%
5044389 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.58 28.0 3.83e-01 78.6% 100.0%
3411558 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.58 39.0 3.65e-01 100.0% 55.7%
4594302 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 29.0 2.88e-01 83.0% 47.0%
3897327 2.1.1.241 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rsm22 0.55 27.0 3.70e-01 77.7% 94.5%
2831852 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.55 37.0 3.87e-01 98.2% 75.2%
3967128 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 27.0 3.37e-01 82.1% 75.7%
3553003 2003.1.5.111 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Rsm22 0.53 27.0 3.61e-01 80.4% 93.3%
5030993 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.53 35.0 4.02e-01 100.0% 96.2%
4073602 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.52 34.0 3.43e-01 82.1% 65.5%
3616640 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 31.0 3.21e-01 91.1% 62.9%
3737837 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 29.0 3.58e-01 85.7% 95.4%