←Back to structures

KU640380.1__AMQ66512.1__X__00030

Bact-Vir

KU640380.1__AMQ66512.1__X__00030

Identity

Accession:
KU640380 ↗
Kingdom:
phage

Quality

74.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Shalavirus› Bacillus_phage_Shbh1

TaxID: 1796992

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 70-208
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.66 29.0 3.01e-01 85.6% 41.8%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.66 48.0 5.36e-01 90.6% 97.2%
3kyiA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.58 39.0 4.12e-01 89.2% 75.0%
3ayfA01 1.20.210.10 Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain 0.57 49.0 3.22e-01 92.1% 66.3%
8sbeA02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.53 43.0 3.97e-01 88.5% 96.8%
2l6xA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 41.0 3.41e-01 81.3% 63.4%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.52 32.0 3.98e-01 73.4% 100.0%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.51 28.0 3.55e-01 92.1% 89.4%
4wpeA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.50 37.0 2.99e-01 76.3% 78.9%
4bemJ00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.50 42.0 3.89e-01 91.4% 89.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3894479 5057.1.1.13 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Strabismus 0.67 58.0 5.88e-01 91.4% 97.0%
3725297 3755.4.1.45 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PF30922 0.67 57.0 5.59e-01 90.6% 89.3%
3530312 2485.1.1.120 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Strabismus 0.67 56.0 5.84e-01 89.9% 98.5%
3904567 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.60 43.0 3.58e-01 75.5% 79.2%
4147943 633.10.1.0 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.58 42.0 4.21e-01 97.1% 72.7%
3709999 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.58 47.0 4.07e-01 89.2% 80.9%
3756888 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.57 40.0 3.78e-01 71.2% 72.5%
3211066 4177.1.1.2 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.57 40.0 3.23e-01 71.2% 71.5%
3656227 633.7.1.0 ↗ alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like 0.56 40.0 4.19e-01 75.5% 79.2%
4021030 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.56 42.0 3.87e-01 97.8% 59.5%
54352 133.2.1.0 ↗ alpha bundles › DH domain-like › Methenyltetrahydrofolate cyclohydrolase-like › Methenyltetrahydrofolate cyclohydrolase-like 0.56 42.0 3.75e-01 79.1% 94.9%
3304304 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.55 31.0 3.49e-01 92.1% 71.4%
3591624 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.53 44.0 3.79e-01 89.2% 83.2%
3514002 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.52 43.0 4.29e-01 91.4% 85.5%
3581704 4177.1.1.2 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.52 38.0 3.22e-01 75.5% 77.1%
3247945 4323.1.1.1 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.51 44.0 3.28e-01 92.8% 87.2%
3763849 1075.5.1.5 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Rft-1 0.51 46.0 3.57e-01 98.6% 78.0%
3727421 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.51 43.0 4.19e-01 95.7% 93.8%
3690563 150.1.1.81 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › SOG2 0.51 35.0 3.64e-01 71.2% 73.3%
D2 medium residues 1-68
PDB