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KU640380.1__AMQ66573.1__X__00091

Bact-Vir

KU640380.1__AMQ66573.1__X__00091

Identity

Accession:
KU640380 ↗
Kingdom:
phage

Quality

60.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 105-178
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.71 61.0 4.60e-01 97.3% 92.4%
3fc7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.69 57.0 5.20e-01 91.9% 88.0%
6n44A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 46.0 3.73e-01 73.0% 77.0%
3vv1A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 48.0 3.81e-01 77.0% 72.3%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.65 52.0 5.04e-01 87.8% 85.7%
3ligA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.65 48.0 3.64e-01 78.4% 74.0%
4jqtA01 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.64 48.0 3.45e-01 78.4% 59.7%
1upsB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 45.0 2.98e-01 73.0% 54.7%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 52.0 4.60e-01 90.5% 73.1%
1uaiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 46.0 3.27e-01 78.4% 55.6%
4ccdA03 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.63 47.0 3.37e-01 78.4% 60.5%
1tkjA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.62 42.0 2.88e-01 70.3% 48.4%
1oq1B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 45.0 3.22e-01 78.4% 65.3%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 43.0 2.82e-01 73.0% 20.1%
1j1tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 45.0 3.17e-01 78.4% 59.2%
2cwsA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 45.0 3.14e-01 78.4% 57.7%
3u1xA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.60 45.0 3.19e-01 78.4% 56.7%
8a7dC01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 44.0 3.08e-01 77.0% 56.0%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.59 43.0 3.18e-01 78.4% 28.8%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 41.0 2.75e-01 73.0% 20.1%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.58 47.0 4.23e-01 93.2% 63.6%
5ocqA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 43.0 2.88e-01 78.4% 58.7%
7pthC01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.57 51.0 3.12e-01 100.0% 85.4%
6m36O01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.57 47.0 4.34e-01 89.2% 84.4%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.57 49.0 4.19e-01 100.0% 85.9%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 43.0 4.30e-01 90.5% 80.3%
1u0kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.57 50.0 4.17e-01 100.0% 88.6%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.56 50.0 4.56e-01 100.0% 81.0%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.56 46.0 3.82e-01 91.9% 99.3%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.55 46.0 3.65e-01 90.5% 58.4%
3w5mA06 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.55 45.0 4.08e-01 89.2% 98.0%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 39.0 3.89e-01 90.5% 71.6%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.55 40.0 3.90e-01 81.1% 95.4%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 49.0 4.01e-01 100.0% 91.1%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 44.0 4.49e-01 94.6% 95.9%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.54 43.0 3.53e-01 93.2% 80.0%
4q05A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 38.0 2.52e-01 77.0% 36.7%
2qb7B02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.52 39.0 3.26e-01 82.4% 55.0%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.52 45.0 3.66e-01 100.0% 74.1%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.68e-01 100.0% 74.6%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.51 42.0 3.21e-01 100.0% 81.4%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4965206 4221.1.1.3 a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › PF26008 0.76 52.0 5.41e-01 77.0% 75.7%
4930498 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.72 61.0 5.52e-01 91.9% 84.0%
3890410 11.2.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF4550 0.71 51.0 3.96e-01 87.8% 35.0%
4100425 11.1.4.90 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF4550 0.71 51.0 4.16e-01 89.2% 42.3%
4959371 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.71 59.0 4.92e-01 90.5% 68.0%
4997576 223.1.1.27 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.69 58.0 5.07e-01 91.9% 79.1%
3989333 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.69 48.0 5.32e-01 87.8% 90.0%
4960716 244.4.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Complex1_49kDa 0.69 56.0 5.37e-01 90.5% 77.6%
4009799 274.1.1.4 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.67 55.0 4.82e-01 87.8% 66.7%
3929256 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.65 56.0 4.60e-01 97.3% 78.6%
3607606 3794.1.1.3 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.65 52.0 4.43e-01 89.2% 64.8%
3404988 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.64 54.0 4.42e-01 91.9% 58.5%
3410681 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.64 44.0 3.35e-01 73.0% 61.2%
3520852 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.63 54.0 4.22e-01 91.9% 88.0%
3232437 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 39.0 3.39e-01 77.0% 41.8%
3596616 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.63 51.0 4.21e-01 89.2% 59.3%
3589839 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.62 55.0 3.57e-01 100.0% 87.8%
3418449 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.62 43.0 2.65e-01 73.0% 19.8%
3692594 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 43.0 2.66e-01 73.0% 16.8%
3928305 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.61 43.0 3.10e-01 83.8% 25.6%
3608527 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.61 41.0 3.17e-01 70.3% 55.3%
3382767 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.60 42.0 2.74e-01 73.0% 24.8%
3952469 3794.1.1.2 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT 0.60 50.0 4.14e-01 90.5% 89.2%
3636368 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.60 51.0 4.13e-01 93.2% 60.7%
3940760 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.60 42.0 2.77e-01 73.0% 19.1%
4017540 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.60 42.0 2.72e-01 73.0% 22.7%
3783065 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 42.0 2.66e-01 73.0% 17.7%
3228995 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.59 46.0 2.73e-01 87.8% 10.9%
3345486 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.59 44.0 2.83e-01 78.4% 79.7%
3932677 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 41.0 3.25e-01 73.0% 39.6%
3636498 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 41.0 2.67e-01 73.0% 20.6%
3221927 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.59 49.0 3.25e-01 97.3% 23.1%
3231485 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.58 43.0 3.35e-01 78.4% 60.0%
3739929 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 41.0 2.68e-01 73.0% 18.1%
3240647 3794.1.1.3 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.58 48.0 4.04e-01 90.5% 96.0%
3507127 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.58 44.0 3.26e-01 82.4% 31.3%
3615406 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 45.0 4.19e-01 90.5% 67.0%
4991691 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 47.0 3.41e-01 94.6% 69.4%
5019887 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.57 42.0 4.24e-01 90.5% 82.2%
4945424 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 47.0 4.09e-01 100.0% 72.3%
1833882 9.4.1.3 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › Pab87_oct 0.56 50.0 4.67e-01 100.0% 87.1%
3215907 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 46.0 3.13e-01 94.6% 24.4%
5001270 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.56 40.0 3.99e-01 93.2% 72.5%
1170463 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.55 39.0 3.77e-01 90.5% 63.7%
4972328 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.55 40.0 4.06e-01 90.5% 80.0%
5082246 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 39.0 4.17e-01 90.5% 93.3%
3965259 243.3.1.16 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY_2 0.55 38.0 3.88e-01 90.5% 75.7%
3435911 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.55 41.0 3.73e-01 91.9% 57.3%
4028525 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.55 37.0 2.80e-01 71.6% 43.2%
4336488 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.54 43.0 4.36e-01 93.2% 97.1%
3410208 331.17.1.1 a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.54 45.0 3.43e-01 98.6% 40.0%
3537588 331.17.1.1 a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.53 45.0 3.39e-01 98.6% 38.9%
3258204 331.17.1.1 a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.53 44.0 3.39e-01 98.6% 40.0%
3714612 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.50 36.0 2.90e-01 90.5% 34.5%
3701944 331.17.1.1 a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.50 44.0 3.35e-01 97.3% 44.0%
3597646 331.17.1.0 a+b two layers › TBP-like › Atp11 › Atp11 0.50 44.0 3.36e-01 98.6% 44.0%
D2 medium residues 15-81
PDB