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KU640380.1__AMQ66586.1__X__00104

Bact-Vir

KU640380.1__AMQ66586.1__X__00104

Identity

Accession:
KU640380 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Shalavirus› Bacillus_phage_Shbh1

TaxID: 1796992

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-73
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23839.2 best DUF7209 77.8 5.40e-22 100.0% 90.9%
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 47.0 4.91e-01 100.0% 71.2%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 46.0 4.82e-01 100.0% 69.7%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 44.0 5.05e-01 97.2% 91.8%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 5.03e-01 100.0% 92.7%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 47.0 4.41e-01 100.0% 62.8%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 47.0 5.03e-01 100.0% 88.7%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.66e-01 95.8% 84.7%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.71e-01 100.0% 80.9%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.87e-01 100.0% 87.7%
5mkiH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.62e-01 98.6% 78.9%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.61 34.0 3.71e-01 100.0% 64.9%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.60 50.0 4.58e-01 100.0% 68.8%
2greF02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.60 41.0 3.99e-01 100.0% 64.1%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.30e-01 100.0% 68.7%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 4.10e-01 100.0% 59.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 4.64e-01 100.0% 94.7%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.51e-01 100.0% 83.1%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 39.0 3.29e-01 71.8% 74.8%
1cttA02 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 41.0 3.43e-01 100.0% 46.1%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 38.0 4.01e-01 100.0% 79.4%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 38.0 3.94e-01 98.6% 75.4%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.56 41.0 3.46e-01 78.9% 85.3%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.55 40.0 4.17e-01 100.0% 85.1%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 47.0 4.85e-01 100.0% 100.0%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 46.0 4.47e-01 100.0% 86.3%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.41e-01 100.0% 85.5%
3qi7A03 3.30.30.130 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.53 25.0 2.99e-01 73.2% 62.2%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 37.0 3.03e-01 73.2% 70.4%
5f1mA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 38.0 2.71e-01 77.5% 56.7%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 46.0 4.47e-01 100.0% 85.2%
1wmdA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.53 36.0 3.04e-01 100.0% 42.7%
1u04A02 3.90.70.180 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 46.0 3.91e-01 94.4% 80.4%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.76e-01 100.0% 75.0%
4c92A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 39.0 3.31e-01 100.0% 45.4%
3ce2A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.52 31.0 3.61e-01 100.0% 89.4%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 38.0 3.83e-01 100.0% 79.2%
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 36.0 2.65e-01 77.5% 39.2%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4499953 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 47.0 5.02e-01 100.0% 78.3%
1263519 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.72 46.0 4.93e-01 100.0% 75.8%
3945489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 46.0 5.31e-01 95.8% 94.0%
167340 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.70 44.0 5.05e-01 97.2% 91.8%
4646501 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 46.0 3.56e-01 100.0% 31.0%
3698553 4012.3.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.69 47.0 5.30e-01 98.6% 92.7%
2557227 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.69 48.0 4.71e-01 100.0% 67.5%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 48.0 5.04e-01 100.0% 82.5%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.67 45.0 5.07e-01 100.0% 89.1%
4937731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 44.0 4.76e-01 97.2% 80.0%
4380345 4.1.1.257 ↗ beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.67 47.0 4.43e-01 100.0% 61.2%
3976834 4.1.1.156 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2158 0.67 42.0 4.88e-01 94.4% 92.0%
4293453 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 47.0 4.59e-01 100.0% 67.5%
4282868 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 48.0 4.91e-01 100.0% 78.6%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.66 48.0 4.56e-01 100.0% 64.7%
3598125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 47.0 4.63e-01 100.0% 70.7%
4270910 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 48.0 4.87e-01 100.0% 78.6%
3232582 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 48.0 4.39e-01 100.0% 60.0%
1734768 4187.1.1.1 ↗ a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB 0.64 34.0 3.69e-01 100.0% 62.1%
4318710 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 44.0 4.62e-01 98.6% 80.0%
3625817 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.63 46.0 4.46e-01 100.0% 68.8%
4221708 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.63 45.0 4.58e-01 100.0% 77.1%
3883725 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 53.0 4.65e-01 100.0% 96.5%
4183853 4.1.1.435 ↗ beta barrels › SH3 › SH3 › SH3 › PF29216 0.62 45.0 4.58e-01 98.6% 78.6%
4225787 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 46.0 4.14e-01 100.0% 57.0%
5037849 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.62 44.0 3.69e-01 100.0% 43.2%
3590658 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 50.0 5.04e-01 100.0% 90.0%
4168737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.55e-01 100.0% 77.0%
3927795 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.87e-01 97.2% 95.0%
4141828 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 45.0 4.49e-01 100.0% 77.0%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.00e-01 100.0% 60.0%
3281945 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 47.0 4.31e-01 100.0% 66.7%
4358168 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 47.0 4.08e-01 100.0% 55.5%
3712122 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.58 44.0 4.18e-01 100.0% 68.2%
4096833 2492.1.1.15 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_2 0.58 41.0 3.45e-01 100.0% 46.1%
4087011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 48.0 4.33e-01 100.0% 67.4%
5057367 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.57 41.0 4.38e-01 97.2% 90.0%
3825252 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.51e-01 100.0% 74.4%
5045122 221.1.3.1 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain › Oxidored_molyb 0.56 49.0 3.84e-01 100.0% 60.6%
3520265 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.55 49.0 3.88e-01 100.0% 62.1%
4284598 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.53 41.0 3.82e-01 95.8% 66.7%
3781 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.52 46.0 3.42e-01 100.0% 58.4%
3821773 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.51 40.0 3.17e-01 85.9% 62.6%
5011500 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.51 42.0 3.74e-01 100.0% 63.0%
5001589 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.51 42.0 3.77e-01 100.0% 64.0%
3196947 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 38.0 2.26e-01 100.0% 9.6%