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KU640380.1__AMQ66652.1__X__00170

Bact-Vir

KU640380.1__AMQ66652.1__X__00170

Identity

Accession:
KU640380 ↗
Kingdom:
phage

Quality

77.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-119
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.72 50.0 4.12e-01 71.2% 66.3%
3vy8X00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.66 49.0 3.49e-01 79.3% 53.7%
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 48.0 4.19e-01 82.9% 70.8%
1e54A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.62 46.0 3.30e-01 79.3% 39.3%
4ufcA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.61 50.0 3.52e-01 87.4% 54.5%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 42.0 4.19e-01 81.1% 70.5%
1s0wC01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.60 40.0 4.33e-01 82.9% 82.4%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 44.0 3.66e-01 76.6% 97.9%
3lydA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.60 48.0 4.48e-01 92.8% 69.0%
1of5B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 45.0 4.30e-01 83.8% 68.8%
2wraA00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.59 37.0 3.66e-01 76.6% 57.4%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 45.0 3.26e-01 79.3% 84.8%
3sy9C01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.58 46.0 3.28e-01 84.7% 92.1%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.58 42.0 3.85e-01 75.7% 99.3%
2qiyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 43.0 4.07e-01 82.9% 64.2%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 45.0 4.26e-01 100.0% 66.9%
2gvhC01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 42.0 3.89e-01 74.8% 91.9%
3klxB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 46.0 3.87e-01 83.8% 63.5%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 48.0 3.45e-01 91.0% 68.4%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.58 42.0 4.13e-01 75.7% 81.4%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 40.0 4.19e-01 73.9% 78.0%
3cnxA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 3.97e-01 85.6% 62.3%
3e7jA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 44.0 3.17e-01 81.1% 78.4%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 4.13e-01 88.3% 70.7%
2pzhA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 39.0 3.71e-01 70.3% 100.0%
2o4vA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.57 45.0 3.11e-01 85.6% 86.4%
1h54B01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.57 43.0 3.27e-01 80.2% 74.3%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.57 39.0 3.42e-01 71.2% 72.2%
2b5lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 46.0 3.19e-01 86.5% 48.7%
5e4bA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 45.0 3.84e-01 83.8% 71.0%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.97e-01 84.7% 66.9%
6i7sG01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.56 43.0 3.33e-01 82.9% 85.2%
1fw3A00 2.40.230.10 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 0.56 42.0 3.28e-01 80.2% 73.2%
2a15A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 4.11e-01 98.2% 69.9%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 4.00e-01 88.3% 69.5%
2gvhB02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 39.0 3.83e-01 72.1% 98.3%
3f7sA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 4.16e-01 89.2% 71.1%
1lo7A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 38.0 3.56e-01 72.1% 100.0%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.55 42.0 3.90e-01 82.9% 70.8%
1lshA01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.54 43.0 3.24e-01 82.9% 87.5%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 4.05e-01 90.1% 65.6%
2rgqB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 3.88e-01 83.8% 66.9%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.86e-01 81.1% 67.4%
1a0sP00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.54 43.0 2.97e-01 86.5% 77.0%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 44.0 3.49e-01 90.1% 91.3%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.89e-01 84.7% 69.5%
2e56A00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 3.42e-01 70.3% 97.9%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.85e-01 84.7% 66.2%
3ff0A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.81e-01 84.7% 65.2%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.53 40.0 3.82e-01 81.1% 71.9%
3f7xA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.99e-01 87.4% 72.2%
2hljA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 35.0 3.31e-01 97.3% 54.7%
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.53 39.0 3.58e-01 78.4% 84.7%
1tk1A00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.52 44.0 3.58e-01 93.7% 98.2%
5i97C00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.52 40.0 3.77e-01 82.0% 74.5%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.48e-01 83.8% 57.6%
4l8nA03 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 44.0 3.88e-01 92.8% 87.8%
2q03A00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.51 40.0 3.79e-01 83.8% 97.0%
4e3eA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 39.0 2.77e-01 81.1% 76.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3268067 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.71 52.0 4.91e-01 83.8% 63.0%
5037172 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.70 55.0 4.82e-01 83.8% 56.9%
5057736 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.69 54.0 5.05e-01 83.8% 68.1%
2559741 881.1.1.3 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › FAP 0.67 55.0 4.79e-01 90.1% 58.8%
3959748 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.67 56.0 5.45e-01 89.2% 90.0%
3651251 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.66 52.0 4.21e-01 83.8% 67.6%
3417002 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 45.0 4.44e-01 77.5% 65.0%
4936909 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.66 51.0 4.32e-01 83.8% 50.6%
3576754 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.65 50.0 5.09e-01 82.0% 94.5%
3217509 243.1.1.46 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382 0.64 50.0 4.50e-01 82.9% 62.0%
3702051 1116.1.1.0 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.64 50.0 4.12e-01 83.8% 95.0%
5055337 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.63 52.0 4.64e-01 90.1% 65.6%
3642585 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.63 48.0 4.58e-01 84.7% 69.2%
3802971 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.63 48.0 4.31e-01 82.0% 58.7%
3484611 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.62 49.0 4.23e-01 83.8% 78.2%
5002666 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.62 49.0 4.06e-01 84.7% 82.0%
3593584 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.62 49.0 3.70e-01 84.7% 55.0%
3744704 5.1.4.173 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_2nd 0.61 46.0 3.20e-01 79.3% 51.5%
5043598 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.61 48.0 4.45e-01 84.7% 78.6%
3470047 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.61 43.0 4.82e-01 83.8% 96.5%
3478508 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.60 49.0 4.24e-01 86.5% 56.5%
3736010 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.60 46.0 3.24e-01 80.2% 85.0%
3961916 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.59 44.0 4.39e-01 91.9% 75.7%
4019099 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 48.0 4.53e-01 93.7% 72.6%
3500426 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.59 48.0 3.34e-01 86.5% 51.9%
3611189 222.1.1.10 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 0.59 42.0 3.60e-01 73.0% 82.9%
4185639 5087.2.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.59 48.0 3.52e-01 89.2% 94.8%
3212332 243.1.1.85 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26531 0.58 45.0 4.29e-01 82.0% 90.8%
3180158 9.13.1.4 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.58 44.0 3.85e-01 80.2% 78.8%
7048 881.1.1.2 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 0.57 49.0 4.15e-01 93.7% 56.9%
4586825 5087.2.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.57 45.0 3.34e-01 84.7% 83.0%
3692485 243.1.1.87 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_SigF 0.57 45.0 4.04e-01 85.6% 64.2%
3262200 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 46.0 4.20e-01 100.0% 66.0%
4022036 243.1.1.87 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_SigF 0.56 45.0 3.91e-01 88.3% 64.5%
3611952 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.56 44.0 3.96e-01 83.8% 64.3%
4024473 243.3.1.20 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 0.56 41.0 4.01e-01 76.6% 75.0%
4974879 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 46.0 4.06e-01 89.2% 61.2%
3960870 222.1.1.9 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.56 39.0 3.46e-01 73.0% 58.7%
3285505 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 43.0 3.77e-01 84.7% 54.9%
3975352 5084.1.1.10 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.55 40.0 3.68e-01 76.6% 98.7%
4973410 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.55 46.0 4.05e-01 89.2% 63.1%
3214201 5087.2.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.55 45.0 3.37e-01 89.2% 91.9%
3278413 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.55 44.0 4.12e-01 98.2% 70.0%
6403 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.55 42.0 3.94e-01 82.9% 72.9%
1308671 222.1.1.20 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N 0.54 38.0 3.60e-01 78.4% 61.8%
3969379 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 41.0 3.75e-01 84.7% 61.3%
169776 243.1.1.4 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PHZA_PHZB 0.53 40.0 3.65e-01 84.7% 56.8%
3515197 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.53 41.0 3.63e-01 83.8% 76.5%
4024130 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 42.0 3.77e-01 87.4% 71.5%
3787225 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.53 40.0 3.44e-01 82.0% 77.9%
3263236 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.53 38.0 3.42e-01 73.9% 80.7%
3895724 5087.2.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.53 43.0 3.27e-01 90.1% 91.3%
3888419 5087.2.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.52 43.0 3.23e-01 89.2% 91.3%
3741415 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.52 42.0 3.65e-01 88.3% 93.1%
3885687 5087.2.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.52 43.0 3.23e-01 89.2% 93.0%
2373 5087.2.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.52 43.0 3.24e-01 89.2% 93.7%
139114 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.52 40.0 3.42e-01 83.8% 54.8%
3216464 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.51 38.0 3.73e-01 82.0% 70.2%
4466411 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.51 39.0 3.48e-01 83.8% 69.1%
3706290 804.1.1.2 a+b four layers › Hypothetical protein YwqG › Hypothetical protein YwqG › Hypothetical protein YwqG › PDCD2_C 0.51 44.0 3.54e-01 94.6% 72.2%