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KU682439.2__AMQ65898.1__AAY80_073__00073

Bact-Vir

KU682439.2__AMQ65898.1__AAY80_073__00073

Identity

Accession:
KU682439 ↗
Kingdom:
phage

Quality

58.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stenotrophomonas_phage_vB_SmaS-DLP_6

TaxID: 1651816

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 110-206
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00127__D196-310
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 62.0 5.75e-01 100.0% 86.0%
4do8A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 33.0 3.82e-01 87.6% 97.0%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 30.0 3.25e-01 100.0% 68.4%
1x5fA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 4.11e-01 94.8% 80.0%
2edyA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 4.29e-01 93.8% 90.3%
6brbD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 4.33e-01 92.8% 100.0%
2y3cA00 3.90.1580.10 Alpha Beta › Alpha-Beta Complex › paralog of FGE (formylglycine-generating enzyme) › paralog of FGE (formylglycine-generating enzyme) 0.50 37.0 2.75e-01 78.4% 92.8%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038875 4166.1.1.0 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like 0.77 73.0 6.83e-01 100.0% 85.2%
3404615 382.1.1.14 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF753 0.55 40.0 4.29e-01 90.7% 89.4%
3580780 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 44.0 4.29e-01 93.8% 88.2%
3408671 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 44.0 4.44e-01 91.8% 96.8%
3607735 5.1.3.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.51 35.0 2.29e-01 70.1% 26.5%
3237662 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 4.18e-01 93.8% 94.3%
4026486 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 4.03e-01 93.8% 97.4%
D2 high residues 225-378
PDB
Domain cluster: rep: LacPavin_0818_WC45_scaffold_160996_curated_closed_complete_prodigal-single.1__X__X__00808__D1309-1457
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 43.0 4.77e-01 97.4% 86.8%
1nvpD02 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.56 19.0 3.35e-01 79.2% 100.0%
1nh2C00 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.53 19.0 3.02e-01 79.2% 92.0%
2znrA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 41.0 3.94e-01 94.8% 72.5%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.52 27.0 3.59e-01 86.4% 100.0%
6x3aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 31.0 3.71e-01 98.7% 88.5%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 36.0 3.68e-01 73.4% 74.1%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038875 4166.1.1.0 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like 0.86 56.0 6.49e-01 100.0% 88.7%
3589732 4166.1.1.2 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Caudo_bapla_N 0.61 47.0 4.69e-01 100.0% 78.7%
4994059 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.56 38.0 4.08e-01 74.7% 79.3%
4938684 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.54 29.0 3.73e-01 90.9% 92.9%
4950136 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.54 27.0 3.68e-01 85.7% 97.3%
3993633 2492.1.1.42 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB, MitMem_reg 0.53 41.0 3.62e-01 95.5% 56.2%
4956897 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.52 27.0 3.46e-01 93.5% 91.3%
3290753 303.1.1.3 ↗ a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › DUF4189 0.50 34.0 3.83e-01 84.4% 91.2%
D3 high residues 406-520
PDB
Domain cluster: rep: JGI24723J26617_10000007_prodigal-single.1__X__X__00464__D50-161
D4 high residues 527-691
PDB
Domain cluster: rep: LacPavin_0818_WC45_scaffold_160996_curated_closed_complete_prodigal-single.1__X__X__00808__D1309-1457
D5 high residues 1353-1456
PDB
D6 high residues 1659-1774
PDB
Domain cluster: rep: MW073017.1__QPB08539.1__X__00060__D1038-1127
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 44.5 2.00e-11 56.9% 98.3%