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KU682439.2__AMQ65905.1__AAY80_233__00203

Bact-Vir

KU682439.2__AMQ65905.1__AAY80_233__00203

Identity

Accession:
KU682439 ↗
Kingdom:
phage

Quality

46.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stenotrophomonas_phage_vB_SmaS-DLP_6

TaxID: 1651816

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 502-637
PDB
Domain cluster: rep: pre1_saliva_scaffold_4_prodigal-single.1__X__X__00023__D58-233
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05838.18 best Glyco_hydro_108 97.2 9.00e-28 56.6% 97.7%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6v3zA00 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.79 72.0 6.50e-01 96.3% 99.4%
2ikbC00 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.72 66.0 6.26e-01 100.0% 98.1%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.58 33.0 3.65e-01 94.9% 68.2%
1on2A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.58 21.0 2.94e-01 99.3% 63.5%
1i36A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.55 33.0 3.75e-01 97.8% 79.8%
1wu3I00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 34.0 3.29e-01 100.0% 57.8%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2756454 235.1.1.13 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_108,PG_binding_3 0.85 81.0 7.37e-01 100.0% 93.1%
2774002 235.1.1.13 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_108,PG_binding_3 0.80 74.0 6.47e-01 97.8% 91.7%
2665501 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.69 64.0 5.82e-01 100.0% 91.6%
156965 235.1.1.7 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme,Gp5_OB 0.69 63.0 5.33e-01 99.3% 77.6%
2456732 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.63 48.0 5.05e-01 99.3% 90.0%
5023736 192.29.1.303 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF1512 0.53 37.0 3.66e-01 76.5% 66.7%
3438866 4351.1.1.1 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.50 43.0 3.54e-01 93.4% 97.2%
D2 medium residues 7-88
PDB
D3 medium residues 115-177
PDB
D4 medium residues 320-383
PDB