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KU682439.2__AMQ65953.1__AAY80_014__00014
Bact-VirKU682439.2__AMQ65953.1__AAY80_014__00014
Identity
- Accession:
- KU682439 ↗
- Kingdom:
- phage
Quality
49.5
mean pLDDT
Taxonomy
TaxID: 1651816
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 192-259
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.70 | 48.0 | 4.03e-01 | 72.1% | 73.3% |
| 1sxjB03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.68 | 54.0 | 4.95e-01 | 89.7% | 97.8% |
| 7zmgL01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 44.0 | 4.22e-01 | 70.6% | 96.2% |
| 1rtwB00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.62 | 43.0 | 3.11e-01 | 73.5% | 66.8% |
| 3dcfA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 40.0 | 3.30e-01 | 72.1% | 56.3% |
| 1qxyA00 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.59 | 51.0 | 3.53e-01 | 100.0% | 66.3% |
| 7craA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 51.0 | 4.69e-01 | 100.0% | 72.8% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.58 | 40.0 | 3.36e-01 | 75.0% | 88.9% |
| 1wn1A02 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.58 | 49.0 | 3.52e-01 | 100.0% | 78.4% |
| 5jolA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.58 | 46.0 | 4.44e-01 | 92.6% | 91.5% |
| 2hyjA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 47.0 | 3.81e-01 | 98.5% | 80.3% |
| 4s2rQ03 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.55 | 45.0 | 3.11e-01 | 100.0% | 68.4% |
| 2r2iA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 47.0 | 4.24e-01 | 100.0% | 81.4% |
| 3g7rA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 45.0 | 3.43e-01 | 98.5% | 58.2% |
| 2af7D00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.54 | 37.0 | 3.10e-01 | 70.6% | 51.2% |
| 5ux2B01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 45.0 | 3.31e-01 | 100.0% | 76.6% |
| 1mw9X02 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.54 | 38.0 | 2.88e-01 | 73.5% | 39.3% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 37.0 | 3.68e-01 | 100.0% | 67.1% |
| 3on2A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 46.0 | 3.39e-01 | 97.1% | 59.5% |
| 2k7bA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 43.0 | 4.21e-01 | 94.1% | 92.1% |
| 2lh9A00 | 3.30.420.610 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like | 0.53 | 41.0 | 3.97e-01 | 85.3% | 96.2% |
| 1f5mA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 45.0 | 3.34e-01 | 95.6% | 83.5% |
| 2genA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 45.0 | 3.36e-01 | 98.5% | 64.4% |
| 2vxzA02 | 1.10.10.1490 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 43.0 | 3.96e-01 | 91.2% | 97.7% |
| 3s63A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.52 | 43.0 | 4.05e-01 | 98.5% | 93.2% |
| 3dewA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 35.0 | 2.89e-01 | 72.1% | 60.0% |
| 4ad9A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 39.0 | 3.72e-01 | 85.3% | 89.3% |
| 2ibdA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 42.0 | 3.37e-01 | 95.6% | 80.3% |
| 4g12A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 45.0 | 3.50e-01 | 100.0% | 79.2% |
| 1nklA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.50 | 42.0 | 4.10e-01 | 100.0% | 96.2% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4931893 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.72 | 51.0 | 4.51e-01 | 75.0% | 84.0% |
| 4964135 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.72 | 50.0 | 4.42e-01 | 73.5% | 84.0% |
| 3290011 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.69 | 47.0 | 4.28e-01 | 72.1% | 86.3% |
| 5034580 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.68 | 47.0 | 4.20e-01 | 73.5% | 84.0% |
| 4947364 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.67 | 48.0 | 4.35e-01 | 76.5% | 92.6% |
| 5013803 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.67 | 47.0 | 3.94e-01 | 75.0% | 71.2% |
| 4095683 | 2004.1.1.226 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N | 0.67 | 52.0 | 3.02e-01 | 88.2% | 12.7% |
| 4480963 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.65 | 46.0 | 4.03e-01 | 75.0% | 79.0% |
| 4645242 | 191.1.1.26 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_24 | 0.64 | 44.0 | 3.52e-01 | 72.1% | 58.6% |
| 4246492 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.64 | 45.0 | 4.13e-01 | 75.0% | 89.5% |
| 3213834 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.63 | 43.0 | 4.16e-01 | 72.1% | 98.7% |
| 4612523 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.61 | 42.0 | 3.09e-01 | 72.1% | 45.9% |
| 4241568 | 2004.1.1.492 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C, ADDB_N, PF27467 | 0.61 | 50.0 | 2.88e-01 | 95.6% | 26.6% |
| 3639581 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.60 | 49.0 | 4.41e-01 | 94.1% | 86.0% |
| 4036335 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.59 | 41.0 | 3.48e-01 | 72.1% | 60.9% |
| 4960265 | 191.1.1.63 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_N | 0.58 | 41.0 | 2.94e-01 | 73.5% | 43.4% |
| 3592224 | 3403.1.1.0 ↗ | alpha bundles › Pre-mRNA-splicing factor PRP9 › Pre-mRNA-splicing factor PRP9 › Pre-mRNA-splicing factor PRP9 | 0.58 | 45.0 | 2.84e-01 | 86.8% | 82.6% |
| 3695839 | 101.1.2.160 ↗ | alpha arrays › HTH › HTH › winged helix domain › BLACT_WH | 0.58 | 35.0 | 3.44e-01 | 98.5% | 55.4% |
| 1225266 | 605.4.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › Rop | 0.57 | 41.0 | 3.79e-01 | 75.0% | 88.6% |
| 4431610 | 2004.1.1.492 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C, ADDB_N, PF27467 | 0.57 | 47.0 | 2.75e-01 | 100.0% | 25.6% |
| 3933424 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.56 | 43.0 | 4.09e-01 | 85.3% | 83.5% |
| 3829115 | 101.1.1.270 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 | 0.56 | 38.0 | 3.92e-01 | 70.6% | 100.0% |
| 5030482 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 46.0 | 3.47e-01 | 97.1% | 35.1% |
| 4410019 | 2004.1.1.492 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C, ADDB_N, PF27467 | 0.56 | 46.0 | 2.72e-01 | 98.5% | 15.9% |
| 3439843 | 101.1.1.270 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 | 0.55 | 39.0 | 3.60e-01 | 97.1% | 58.8% |
| 5004097 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.55 | 39.0 | 3.30e-01 | 76.5% | 71.7% |
| 3327522 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.54 | 38.0 | 3.79e-01 | 92.6% | 71.4% |
| 4543408 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.54 | 37.0 | 3.94e-01 | 75.0% | 95.0% |
| 5049614 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 40.0 | 3.72e-01 | 80.9% | 89.4% |
| 3739076 | 109.4.1.1362 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG5_C | 0.53 | 36.0 | 2.51e-01 | 73.5% | 27.4% |
| 3596853 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 42.0 | 3.26e-01 | 91.2% | 54.4% |
| 3964425 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.52 | 32.0 | 3.52e-01 | 83.8% | 82.0% |
| 3595011 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 39.0 | 3.88e-01 | 83.8% | 97.3% |
| 3590947 | 1141.1.1.0 ↗ | alpha arrays › Glycosyl transferase TarS linker domain › Glycosyl transferase TarS linker domain › Glycosyl transferase TarS linker domain | 0.52 | 42.0 | 3.66e-01 | 91.2% | 67.3% |
| 3947762 | 191.1.1.29 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_27 | 0.52 | 44.0 | 3.51e-01 | 98.5% | 77.7% |
| 4944986 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.52 | 43.0 | 3.14e-01 | 100.0% | 96.8% |
| 4961950 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 43.0 | 3.39e-01 | 95.6% | 89.0% |
| 4544981 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.51 | 33.0 | 3.67e-01 | 82.4% | 90.0% |
| 3290165 | 4070.1.1.0 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like | 0.51 | 43.0 | 3.14e-01 | 100.0% | 58.1% |
| 3290939 | 191.1.1.26 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_24 | 0.51 | 42.0 | 3.51e-01 | 94.1% | 90.8% |
| 4323404 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.51 | 36.0 | 3.59e-01 | 92.6% | 71.4% |
| 5016964 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 3.83e-01 | 80.9% | 97.1% |
| 4980175 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.51 | 45.0 | 3.58e-01 | 100.0% | 77.1% |
| 4112388 | 101.35.1.19 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2+RecX_HTH1 | 0.50 | 33.0 | 3.02e-01 | 86.8% | 47.0% |
| 3739861 | 101.1.2.198 ↗ | alpha arrays › HTH › HTH › winged helix domain › ORC1_wHTH | 0.50 | 37.0 | 3.29e-01 | 85.3% | 76.5% |
D2
medium
residues 1-117