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KU682439.2__AMQ66020.1__AAY80_067__00067

Bact-Vir

KU682439.2__AMQ66020.1__AAY80_067__00067

Identity

Accession:
KU682439 ↗
Kingdom:
phage

Quality

78.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-102
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jmwA00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.82 59.0 5.13e-01 74.7% 66.4%
1qoyA00 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.80 67.0 4.66e-01 88.9% 68.6%
2d4uB00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.80 58.0 4.90e-01 74.7% 63.9%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.78 56.0 5.49e-01 74.7% 90.7%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.78 56.0 5.63e-01 73.7% 92.9%
1xwjA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.78 54.0 4.92e-01 71.7% 64.6%
4k0dA00 1.20.120.1730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.78 56.0 4.91e-01 74.7% 58.0%
2wb7A03 1.20.120.870 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain 0.75 58.0 5.18e-01 80.8% 100.0%
1h6gA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.75 53.0 5.00e-01 73.7% 73.1%
2okuA00 1.20.120.470 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Acyl-CoA dehydrogenase, C-terminal domain 0.74 57.0 5.35e-01 81.8% 88.5%
6h2dS01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.74 59.0 4.52e-01 85.9% 97.3%
1y4cA03 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.74 51.0 4.86e-01 70.7% 62.8%
1v9vA01 1.20.1480.20 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like 0.73 60.0 6.17e-01 87.9% 91.6%
1wrdA00 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 53.0 5.34e-01 75.8% 94.9%
1r0dA00 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.72 63.0 5.15e-01 100.0% 87.0%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.71 52.0 4.91e-01 75.8% 95.7%
2l6hA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.70 48.0 4.17e-01 70.7% 53.9%
4yjwA00 1.20.120.930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 0.70 50.0 4.30e-01 74.7% 59.5%
3dxpA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.69 53.0 4.01e-01 81.8% 77.5%
2lqgA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.69 55.0 4.94e-01 86.9% 87.7%
2cmrA00 1.20.58.1860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 63.0 5.01e-01 100.0% 89.6%
4akgA02 1.20.140.100 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain 0.68 50.0 4.20e-01 77.8% 80.4%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 55.0 4.85e-01 91.9% 59.1%
3gi8C00 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.67 52.0 3.39e-01 82.8% 88.7%
4od4A01 1.10.357.140 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › UbiA prenyltransferase 0.67 58.0 4.96e-01 93.9% 69.2%
4x28C03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.66 54.0 4.80e-01 88.9% 84.6%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.65 50.0 4.67e-01 80.8% 68.6%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.65 50.0 4.74e-01 82.8% 93.2%
4al0A00 1.20.120.550 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain 0.64 50.0 4.47e-01 84.8% 95.9%
1xzpA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.64 57.0 4.84e-01 100.0% 79.5%
1yhlA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.63 57.0 3.87e-01 100.0% 45.0%
3ajmB02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.63 54.0 4.88e-01 92.9% 69.9%
8e9gK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 42.0 4.42e-01 74.7% 74.7%
8hk0B03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.63 49.0 4.41e-01 83.8% 82.6%
6ko5A02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.63 49.0 3.53e-01 83.8% 87.3%
4gf0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 43.0 4.16e-01 71.7% 83.2%
3thxB03 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.59 51.0 4.22e-01 97.0% 69.6%
1wtyA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.58 40.0 3.88e-01 72.7% 74.1%
8cdaC01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.58 40.0 3.80e-01 70.7% 68.4%
2oezA02 1.10.3900.10 Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like 0.58 42.0 3.56e-01 75.8% 71.2%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.54 37.0 2.64e-01 70.7% 70.4%
7utzR02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 47.0 3.42e-01 99.0% 78.0%
3m9vA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.52 39.0 3.65e-01 81.8% 67.7%
1a00B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 40.0 3.59e-01 85.9% 91.1%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018556 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.82 58.0 5.51e-01 72.7% 80.0%
3815546 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.82 69.0 5.84e-01 88.9% 76.1%
3515526 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.82 69.0 6.18e-01 89.9% 78.5%
4525096 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.82 68.0 5.68e-01 88.9% 66.1%
3454282 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.82 59.0 4.77e-01 74.7% 73.1%
3688917 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.81 68.0 6.23e-01 87.9% 92.0%
2324029 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.80 57.0 5.27e-01 72.7% 66.4%
3831865 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.80 67.0 6.11e-01 89.9% 85.4%
5018554 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.79 58.0 5.78e-01 74.7% 94.0%
4033697 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.79 54.0 5.34e-01 70.7% 79.0%
5077080 605.4.1.0 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.79 54.0 5.68e-01 70.7% 85.6%
4986368 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.79 54.0 5.70e-01 70.7% 86.5%
3953703 601.33.1.1 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD 0.79 54.0 4.86e-01 70.7% 70.7%
4262615 601.4.1.27 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › DUF1516 0.77 56.0 5.07e-01 74.7% 62.3%
3826910 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.76 65.0 5.50e-01 91.9% 66.3%
3236429 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.76 52.0 3.82e-01 70.7% 38.5%
3560590 3755.3.1.142 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › FAM186A-B_C 0.76 61.0 5.21e-01 83.8% 93.3%
3697868 4207.1.1.65 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › DUF2985 0.76 53.0 4.02e-01 71.7% 46.8%
3419333 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.76 53.0 4.34e-01 72.7% 67.2%
3408722 633.23.1.20 alpha bundles › Bromodomain-like › Claudin › Claudin › Atthog 0.75 62.0 5.18e-01 88.9% 88.7%
3998597 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.75 64.0 5.13e-01 90.9% 85.9%
3742353 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.75 61.0 4.66e-01 88.9% 89.5%
4326711 601.1.2.2 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › I_LWEQ 0.74 66.0 5.29e-01 100.0% 84.5%
3221571 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.74 53.0 4.91e-01 74.7% 72.0%
3741398 632.1.1.8 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › SOG2 0.74 60.0 5.49e-01 87.9% 89.2%
3833771 604.5.1.7 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ALMT 0.74 66.0 5.15e-01 100.0% 85.6%
3411249 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.73 60.0 5.55e-01 89.9% 82.3%
3788870 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.73 62.0 4.91e-01 91.9% 93.5%
3628972 633.23.1.5 alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.73 59.0 4.68e-01 88.9% 86.2%
3230548 633.23.1.5 alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.72 59.0 4.59e-01 89.9% 87.0%
3840131 5069.1.1.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.71 49.0 4.33e-01 70.7% 57.9%
3382881 601.4.1.41 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › Chloroplast_duf 0.71 49.0 3.59e-01 70.7% 58.5%
3324048 604.5.1.7 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ALMT 0.71 65.0 5.15e-01 100.0% 83.6%
None 0.69 54.0 3.66e-01 82.8% 51.5%
3676423 174.1.1.72 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF2985 0.69 56.0 4.52e-01 87.9% 66.2%
5044882 140.1.1.7 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.69 49.0 3.83e-01 74.7% 34.3%
3329547 604.6.1.22 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › EMC4 0.69 50.0 4.81e-01 74.7% 83.6%
4952876 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.68 47.0 4.92e-01 71.7% 91.1%
3256502 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.68 50.0 3.80e-01 77.8% 63.0%
3993967 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.68 48.0 4.31e-01 72.7% 65.2%
3177591 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.67 56.0 4.29e-01 90.9% 79.1%
4003426 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.67 59.0 5.17e-01 100.0% 87.1%
3204692 5001.1.1.39 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › RTA1 0.67 59.0 4.34e-01 99.0% 74.3%
3388481 109.4.1.899 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS4_8HBD 0.65 60.0 4.46e-01 100.0% 48.1%
5054165 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 56.0 4.36e-01 100.0% 49.5%
3427848 109.7.1.0 alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.62 48.0 5.09e-01 90.9% 89.9%
3739454 192.5.1.38 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › NEDD4_Bsd2 0.62 48.0 4.73e-01 80.8% 81.0%
3227034 5069.1.3.65 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › PF31020 0.59 45.0 4.29e-01 81.8% 84.3%
3743434 3542.1.1.3 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.56 41.0 3.05e-01 76.8% 98.6%
3463858 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.55 45.0 4.51e-01 88.9% 94.0%