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KU682439.2__AMQ66051.1__AAY80_113__00113

Bact-Vir

KU682439.2__AMQ66051.1__AAY80_113__00113

Identity

Accession:
KU682439 ↗
Kingdom:
phage

Quality

90.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stenotrophomonas_phage_vB_SmaS-DLP_6

TaxID: 1651816

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-100
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.82 47.0 4.20e-01 100.0% 42.1%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.64 38.0 4.08e-01 92.8% 67.9%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 41.0 3.71e-01 70.1% 50.4%
3sc7X01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 54.0 3.74e-01 96.9% 54.5%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.60 49.0 4.30e-01 87.6% 86.0%
3v8uA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.60 32.0 3.32e-01 71.1% 54.4%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.60 46.0 3.78e-01 100.0% 44.6%
1v0fA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 52.0 3.52e-01 96.9% 75.6%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.59 43.0 3.80e-01 81.4% 52.9%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 39.0 3.61e-01 95.9% 53.3%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 44.0 4.28e-01 78.4% 74.3%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 36.0 4.07e-01 71.1% 83.1%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 46.0 4.08e-01 88.7% 59.3%
2jkbA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 49.0 3.36e-01 95.9% 49.9%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 39.0 3.40e-01 100.0% 45.1%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.57 51.0 3.47e-01 96.9% 38.2%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 39.0 3.60e-01 94.8% 56.7%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 49.0 3.37e-01 96.9% 36.8%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 39.0 3.40e-01 100.0% 47.3%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.56 47.0 3.26e-01 92.8% 40.4%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.55 29.0 3.08e-01 70.1% 52.3%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.55 47.0 3.49e-01 95.9% 63.3%
4ktpB02 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.55 38.0 4.18e-01 72.2% 100.0%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 47.0 3.43e-01 96.9% 58.2%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 48.0 3.50e-01 93.8% 97.2%
1h54A03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.55 38.0 4.33e-01 100.0% 94.6%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.54 36.0 3.68e-01 96.9% 69.1%
3bvxA04 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.54 50.0 3.52e-01 100.0% 86.1%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 35.0 4.15e-01 83.5% 98.5%
2b5lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 3.20e-01 99.0% 82.2%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 42.0 3.60e-01 84.5% 93.1%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.54 47.0 3.96e-01 94.8% 62.4%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.53 48.0 3.97e-01 95.9% 62.3%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.53 39.0 3.16e-01 83.5% 39.3%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.53 39.0 3.50e-01 77.3% 69.1%
2plgA01 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 45.0 4.04e-01 92.8% 68.2%
3v39A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 44.0 3.34e-01 92.8% 66.9%
1jy1A01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.52 45.0 3.49e-01 92.8% 81.8%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.52 42.0 3.72e-01 86.6% 82.9%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.52 33.0 3.24e-01 71.1% 56.4%
3p0lD00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 37.0 3.07e-01 96.9% 40.0%
3w7tA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.51 46.0 3.42e-01 96.9% 76.7%
1xn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 42.0 3.67e-01 100.0% 60.1%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 46.0 3.76e-01 100.0% 63.4%
4o4oA00 2.40.128.590 Mainly Beta › Beta Barrel › Lipocalin › CpcT/CpeT domain 0.51 45.0 3.63e-01 100.0% 50.3%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4195832 9.1.1.24 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.80 47.0 4.22e-01 100.0% 43.8%
3567966 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.80 46.0 4.70e-01 100.0% 58.9%
3236870 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.76 48.0 4.37e-01 85.6% 48.5%
3479716 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.70 41.0 4.35e-01 93.8% 65.9%
3927196 5.1.4.155 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MIOS_WD40 0.67 50.0 3.41e-01 78.4% 24.9%
3215691 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.66 45.0 3.17e-01 85.6% 22.7%
5036807 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.66 38.0 3.85e-01 87.6% 57.9%
5035423 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 41.0 4.39e-01 80.4% 72.9%
3961706 4.1.1.161 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4178 0.64 38.0 4.52e-01 97.9% 87.7%
3962450 9.27.1.0 ↗ beta barrels › Lipocalins/Streptavidin › LpqH › LpqH 0.64 40.0 3.93e-01 88.7% 58.1%
3462090 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.63 56.0 3.81e-01 97.9% 44.2%
5070684 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.63 44.0 3.45e-01 71.1% 64.0%
3416070 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 49.0 3.34e-01 84.5% 24.5%
3939595 5.1.5.88 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nucleoporin_N 0.62 54.0 3.38e-01 94.8% 27.7%
3715886 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 54.0 3.60e-01 95.9% 53.0%
3421682 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 52.0 3.60e-01 94.8% 61.5%
3960559 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.61 41.0 3.77e-01 73.2% 53.7%
3222830 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.60 41.0 3.10e-01 86.6% 29.8%
3690104 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.60 47.0 4.09e-01 83.5% 60.0%
3474457 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.60 49.0 5.02e-01 96.9% 90.5%
3412515 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.60 52.0 3.27e-01 95.9% 44.0%
5791 295.1.1.6 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.59 39.0 3.62e-01 95.9% 53.8%
3987480 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.59 42.0 3.41e-01 80.4% 38.9%
3817626 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.59 46.0 3.78e-01 84.5% 46.7%
3266554 331.1.1.5 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.59 37.0 4.05e-01 96.9% 77.5%
3177736 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 51.0 3.24e-01 96.9% 36.8%
3441510 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 50.0 3.72e-01 99.0% 58.5%
3417117 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 51.0 3.57e-01 100.0% 43.3%
3367922 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.58 41.0 4.13e-01 73.2% 97.9%
3707402 12.6.1.1 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C 0.58 35.0 3.99e-01 82.5% 80.0%
5047048 246.2.1.9 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.57 41.0 3.24e-01 75.3% 100.0%
5792 295.1.1.6 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.56 39.0 3.59e-01 94.8% 56.2%
3276429 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.56 49.0 3.45e-01 96.9% 40.0%
3733356 298.1.1.25 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › ox_reductase_C 0.56 39.0 3.30e-01 85.6% 42.4%
1148074 3400.1.1.1 ↗ a+b complex topology › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Filo_VP24 0.55 38.0 2.91e-01 71.1% 67.1%
3583675 5.1.4.321 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30361 0.55 48.0 3.35e-01 100.0% 36.5%
3782222 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 47.0 4.07e-01 95.9% 61.3%
3910955 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 48.0 3.79e-01 100.0% 58.6%
5073695 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.54 39.0 3.95e-01 77.3% 89.0%
2774111 12.6.1.1 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C 0.53 38.0 4.18e-01 73.2% 96.2%
5059102 241.1.1.30 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF26556 0.51 44.0 3.80e-01 91.8% 69.0%
3903928 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 45.0 3.64e-01 100.0% 55.4%
3265841 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.51 40.0 4.01e-01 92.8% 84.0%
3740323 101.1.9.6 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N 0.50 40.0 3.85e-01 97.9% 73.0%
5015019 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.50 29.0 3.38e-01 81.4% 88.3%