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KU682439.2__AMQ66058.1__AAY80_060__00060

Bact-Vir

KU682439.2__AMQ66058.1__AAY80_060__00060

Identity

Accession:
KU682439 ↗
Kingdom:
phage

Quality

71.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stenotrophomonas_phage_vB_SmaS-DLP_6

TaxID: 1651816

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-81
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4p1wA00 1.10.10.2570 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 40.0 4.00e-01 100.0% 54.2%
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.68 57.0 5.21e-01 100.0% 69.7%
2ntxA02 1.20.58.1310 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 2 0.64 50.0 4.41e-01 100.0% 58.3%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 43.0 3.70e-01 84.5% 44.2%
3ldgA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.61 44.0 3.25e-01 100.0% 27.8%
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.58 51.0 4.51e-01 100.0% 80.4%
2o7gA00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.57 44.0 4.23e-01 88.7% 71.6%
2gb7D00 3.40.91.80 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.56 46.0 3.12e-01 93.0% 59.6%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.56 44.0 4.71e-01 98.6% 100.0%
6vynC01 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.56 42.0 4.16e-01 80.3% 89.2%
6zxqA01 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.54 45.0 4.25e-01 100.0% 94.6%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 45.0 4.01e-01 100.0% 85.6%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.53 39.0 4.10e-01 77.5% 86.2%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 45.0 4.03e-01 100.0% 88.1%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.53 43.0 4.47e-01 100.0% 98.5%
1dlcA01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.53 43.0 3.16e-01 97.2% 97.8%
1ysqA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 45.0 3.44e-01 100.0% 85.1%
3vbbE01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.52 38.0 3.18e-01 98.6% 44.5%
5n17A01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.52 45.0 4.05e-01 100.0% 81.7%
2guzA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.52 40.0 4.09e-01 100.0% 88.7%
4q20A01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.51 38.0 3.63e-01 78.9% 70.7%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.51 41.0 3.66e-01 100.0% 85.5%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 43.0 3.49e-01 100.0% 55.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4046399 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.75 61.0 5.77e-01 100.0% 74.1%
4611743 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.71 60.0 5.57e-01 100.0% 73.3%
3478767 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.69 54.0 3.82e-01 93.0% 27.9%
3628378 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.68 37.0 2.78e-01 100.0% 23.0%
5019263 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.63 53.0 4.85e-01 100.0% 75.0%
4240410 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 42.0 3.36e-01 71.8% 100.0%
3556488 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.61 47.0 2.83e-01 85.9% 11.8%
3601905 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 52.0 4.91e-01 100.0% 90.6%
6731 244.3.1.3 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.58 51.0 4.51e-01 100.0% 80.4%
3335172 108.1.1.198 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › Trigger_C 0.58 43.0 3.79e-01 81.7% 59.1%
3641319 621.1.1.1 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GBP_C 0.57 47.0 3.79e-01 100.0% 44.2%
3652686 109.3.1.316 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_4, ELYS 0.57 49.0 3.45e-01 100.0% 30.2%
3747266 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.56 42.0 3.11e-01 100.0% 29.0%
4175653 5069.1.3.4 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › CybS 0.56 43.0 3.71e-01 85.9% 60.5%
3417527 109.4.1.11 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI3Ka 0.56 38.0 2.72e-01 70.4% 39.0%
5009376 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.55 46.0 3.83e-01 100.0% 76.6%
3588519 101.1.2.49 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.54 47.0 3.54e-01 93.0% 47.9%
4152321 3455.1.1.1 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors › RXLR 0.54 36.0 3.71e-01 100.0% 75.4%
5012033 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.53 42.0 3.66e-01 87.3% 86.1%
4586614 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.52 39.0 4.16e-01 98.6% 100.0%
5041136 159.1.2.1 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PRA-PH 0.51 36.0 3.40e-01 76.1% 60.0%
3717348 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 43.0 2.53e-01 94.4% 12.0%