←Back to structures

KU682439.2__AMQ66063.1__AAY80_167__00158

Bact-Vir

KU682439.2__AMQ66063.1__AAY80_167__00158

Identity

Accession:
KU682439 ↗
Kingdom:
phage

Quality

95.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stenotrophomonas_phage_vB_SmaS-DLP_6

TaxID: 1651816

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-85
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lqhA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.70 58.0 5.33e-01 89.0% 71.7%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.70 57.0 5.17e-01 89.0% 92.7%
2lqgA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.67 53.0 4.52e-01 87.8% 77.5%
3urzA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.66 45.0 3.41e-01 72.0% 37.6%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.64 51.0 4.78e-01 87.8% 87.3%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.62 43.0 4.02e-01 72.0% 61.2%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 42.0 3.31e-01 70.7% 69.8%
2v5cA03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.61 43.0 3.77e-01 75.6% 76.9%
1j8yF01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.59 41.0 4.13e-01 73.2% 89.5%
4o1pD02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 44.0 3.24e-01 82.9% 67.7%
1z72A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.59 47.0 3.56e-01 90.2% 70.4%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 45.0 4.00e-01 89.0% 56.6%
3frrA00 1.20.1260.60 Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 0.58 46.0 3.61e-01 87.8% 60.8%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.58 40.0 3.73e-01 72.0% 78.5%
3u3wA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 41.0 4.42e-01 89.0% 92.8%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 41.0 4.42e-01 89.0% 93.9%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 44.0 4.43e-01 87.8% 86.4%
2mbgA01 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.56 43.0 3.28e-01 82.9% 54.3%
1y7yA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 40.0 4.30e-01 87.8% 91.3%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 41.0 4.07e-01 89.0% 75.3%
2v0cA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.55 48.0 3.84e-01 96.3% 69.8%
2awiA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 39.0 4.25e-01 89.0% 94.0%
3f2eA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 41.0 4.13e-01 86.6% 90.4%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 45.0 3.79e-01 96.3% 90.3%
2kpjA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 37.0 3.96e-01 87.8% 91.4%
7ar7E01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.52 37.0 4.03e-01 74.4% 98.4%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 38.0 4.07e-01 89.0% 98.5%
6oi7A01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.52 43.0 3.42e-01 98.8% 77.6%
3zibC00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 35.0 3.44e-01 73.2% 84.4%
1lliA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 38.0 3.75e-01 87.8% 76.4%
2ebyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.50 36.0 3.74e-01 86.6% 82.3%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.50 40.0 3.97e-01 89.0% 96.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3236284 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.63 43.0 4.40e-01 70.7% 88.7%
3701680 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.62 49.0 4.62e-01 85.4% 78.8%
4939273 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.60 42.0 4.46e-01 72.0% 90.0%
3402139 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.60 47.0 4.67e-01 85.4% 84.7%
3894478 604.9.1.2 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Strabismus 0.58 40.0 3.73e-01 72.0% 68.6%
3391706 192.5.1.0 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.55 42.0 3.66e-01 82.9% 60.8%
3903795 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 40.0 3.47e-01 79.3% 66.7%
3896722 622.6.1.0 ↗ alpha bundles › YvfG-like › NLR family member X1 C-terminal domain › NLR family member X1 C-terminal domain 0.54 39.0 2.66e-01 78.0% 41.2%
3789973 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.54 48.0 4.13e-01 100.0% 79.2%
3232756 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.53 38.0 3.76e-01 73.2% 77.6%
381796 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.53 38.0 3.39e-01 78.0% 80.2%
4234863 101.1.4.17 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.52 40.0 4.11e-01 90.2% 94.7%
3587541 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.52 36.0 3.56e-01 72.0% 71.1%
3581241 198.1.1.5 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › ARMET_N 0.50 40.0 3.61e-01 87.8% 81.7%