Back to structures

KU682439.2__AMQ66079.1__AAY80_108__00108

Bact-Vir

KU682439.2__AMQ66079.1__AAY80_108__00108

Identity

Accession:
KU682439 ↗
Kingdom:
phage

Quality

95.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-78
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qlzA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 60.0 6.53e-01 84.2% 96.8%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 57.0 5.19e-01 77.6% 59.6%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 57.0 5.75e-01 80.3% 87.0%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 55.0 5.06e-01 77.6% 63.0%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 55.0 5.55e-01 78.9% 93.6%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 54.0 5.02e-01 77.6% 64.3%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 55.0 5.24e-01 77.6% 67.8%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 54.0 4.43e-01 77.6% 46.1%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 4.39e-01 77.6% 43.1%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 4.80e-01 77.6% 62.9%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 52.0 4.75e-01 76.3% 58.7%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 4.76e-01 77.6% 65.1%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 53.0 4.87e-01 77.6% 61.2%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 53.0 4.76e-01 77.6% 63.8%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 52.0 4.62e-01 77.6% 55.4%
3lfkD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 52.0 4.61e-01 77.6% 53.6%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 51.0 4.54e-01 77.6% 59.8%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 51.0 3.98e-01 77.6% 37.5%
2fswA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 51.0 4.67e-01 77.6% 61.8%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 51.0 4.64e-01 77.6% 68.0%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 50.0 4.60e-01 77.6% 67.0%
3euhD01 1.10.10.2250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.68 48.0 5.03e-01 77.6% 81.4%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 4.71e-01 77.6% 80.9%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 5.08e-01 80.3% 93.3%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 3.94e-01 77.6% 44.2%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.77e-01 84.2% 70.0%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 4.82e-01 77.6% 83.6%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.62 44.0 4.67e-01 75.0% 86.6%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.61 44.0 4.60e-01 77.6% 84.3%
5a48B00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.61 51.0 4.74e-01 100.0% 74.0%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 3.90e-01 76.3% 65.0%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 52.0 4.45e-01 97.4% 69.2%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 44.0 3.90e-01 80.3% 88.6%
1httA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.58 51.0 3.51e-01 97.4% 89.1%
5f9eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 41.0 3.48e-01 75.0% 84.3%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 42.0 3.89e-01 78.9% 70.9%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.58e-01 77.6% 76.4%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 42.0 3.73e-01 77.6% 70.3%
3zieD00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.57 43.0 4.25e-01 81.6% 82.9%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.57 41.0 4.19e-01 77.6% 80.0%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.55 40.0 3.64e-01 80.3% 61.3%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 40.0 3.74e-01 77.6% 81.1%
3p04A00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.54 41.0 4.15e-01 100.0% 81.8%
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.54 39.0 3.98e-01 77.6% 84.9%
2i4lA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 46.0 3.07e-01 98.7% 82.1%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.53 38.0 3.52e-01 76.3% 89.1%
8k1fC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 38.0 2.86e-01 76.3% 36.2%
6swc801 3.30.30.170 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.52 36.0 3.22e-01 73.7% 49.1%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 37.0 3.01e-01 77.6% 54.8%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 3.93e-01 100.0% 69.6%
1s2oA02 3.90.1070.10 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.51 36.0 3.72e-01 76.3% 93.0%
2amyA02 3.30.1240.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain 0.51 37.0 3.44e-01 78.9% 87.3%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.51 36.0 3.08e-01 77.6% 79.9%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3339574 101.1.2.385 alpha arrays › HTH › HTH › winged helix domain › HRQ1_WHD 0.79 57.0 5.36e-01 77.6% 63.3%
3716093 101.1.2.169 alpha arrays › HTH › HTH › winged helix domain › PheRS_DBD3 0.77 55.0 4.84e-01 77.6% 51.8%
3615681 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 54.0 4.79e-01 77.6% 51.8%
5058268 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.75 55.0 4.80e-01 77.6% 61.7%
4998174 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 54.0 4.09e-01 77.6% 39.4%
4970751 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 53.0 5.41e-01 77.6% 80.0%
3471467 101.1.2.169 alpha arrays › HTH › HTH › winged helix domain › PheRS_DBD3 0.73 51.0 4.57e-01 76.3% 52.4%
3967651 101.1.2.378 alpha arrays › HTH › HTH › winged helix domain › MksE 0.73 51.0 5.70e-01 76.3% 93.3%
3493123 101.1.1.321 alpha arrays › HTH › HTH › Three-helical HTH › PheRS_DBD3 0.73 50.0 4.54e-01 76.3% 52.4%
3481408 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 53.0 3.96e-01 78.9% 39.5%
4956853 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 51.0 4.97e-01 76.3% 67.1%
4966559 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 50.0 4.49e-01 77.6% 51.8%
4985785 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 50.0 5.09e-01 76.3% 76.0%
4933412 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.71 52.0 4.17e-01 77.6% 42.8%
3641521 101.1.2.79 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.71 52.0 5.31e-01 82.9% 80.0%
4420776 3492.1.1.1 a+b two layers › Chromosome partition protein mukE N-terminal domain › Chromosome partition protein mukE N-terminal domain › Chromosome partition protein mukE N-terminal domain › MukE 0.70 51.0 3.63e-01 78.9% 26.4%
3259953 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 51.0 4.12e-01 77.6% 42.8%
3711218 320.4.1.3 a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB 0.69 50.0 3.38e-01 77.6% 22.8%
3305572 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.68 50.0 3.25e-01 77.6% 19.4%
4250106 101.1.2.274 alpha arrays › HTH › HTH › winged helix domain › SgrR_N 0.68 49.0 3.40e-01 76.3% 24.3%
3743466 101.1.2.267 alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.67 55.0 4.96e-01 90.8% 68.6%
3805546 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.67 48.0 4.27e-01 77.6% 66.1%
3499819 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 47.0 4.82e-01 76.3% 88.6%
4648749 101.1.2.274 alpha arrays › HTH › HTH › winged helix domain › SgrR_N 0.66 47.0 4.11e-01 76.3% 58.3%
3979999 101.1.2.274 alpha arrays › HTH › HTH › winged helix domain › SgrR_N 0.65 47.0 4.23e-01 76.3% 60.0%
3168448 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.65 46.0 3.95e-01 76.3% 54.3%
3193726 101.1.2.267 alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.64 51.0 4.17e-01 88.2% 77.9%
4022000 101.1.2.79 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.64 47.0 4.85e-01 84.2% 87.1%
3221396 101.1.2.118 alpha arrays › HTH › HTH › winged helix domain › Dcc1 0.61 45.0 4.84e-01 77.6% 93.7%
3743748 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 50.0 4.82e-01 100.0% 80.0%
4945656 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 53.0 4.17e-01 100.0% 91.9%
3304324 101.1.2.106 alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 0.59 42.0 3.56e-01 76.3% 65.9%
4947248 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 52.0 4.55e-01 100.0% 84.3%
3543869 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.56 42.0 3.97e-01 81.6% 68.4%
3290652 306.2.1.0 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor 0.56 40.0 3.87e-01 77.6% 77.8%
1211839 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.55 39.0 3.72e-01 77.6% 80.2%
3710687 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.55 41.0 4.18e-01 84.2% 82.7%
3698585 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.55 42.0 4.21e-01 85.5% 90.0%
4200948 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.55 40.0 3.66e-01 76.3% 65.0%
3307802 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.53 36.0 3.45e-01 71.1% 64.8%
4519248 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.52 33.0 3.69e-01 72.4% 96.0%
3877590 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.52 35.0 3.61e-01 76.3% 72.0%
4870414 304.161.1.1 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in TMEM16 lipid scramblase › Alpha-beta plait domain in TMEM16 lipid scramblase › Anoctamin_N 0.52 36.0 3.04e-01 88.2% 40.9%
4997133 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.52 35.0 3.30e-01 71.1% 60.0%
3641694 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.51 35.0 3.20e-01 71.1% 54.3%
3593859 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.51 35.0 3.18e-01 71.1% 54.3%
5050501 3715.1.1.1 a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e 0.50 38.0 3.61e-01 85.5% 71.6%