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KU686202.1__AOV59892.1__N231010_193__00193

Bact-Vir

KU686202.1__AOV59892.1__N231010_193__00193

Identity

Accession:
KU686202 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-49
PDB
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dl5A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 58.0 3.86e-01 100.0% 59.2%
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.66 50.0 4.86e-01 84.8% 78.4%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.65 51.0 5.20e-01 89.1% 100.0%
1ob8A00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.65 54.0 4.16e-01 100.0% 89.1%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.65 52.0 4.99e-01 95.7% 81.8%
1qlmA02 3.30.1030.10 Alpha Beta › 2-Layer Sandwich › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 2 › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 2 0.64 49.0 3.30e-01 89.1% 49.5%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.62 34.0 2.75e-01 80.4% 24.4%
3mqgA02 2.20.70.110 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.60 40.0 4.15e-01 73.9% 79.5%
5anpA00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.60 49.0 3.60e-01 100.0% 65.5%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 43.0 2.64e-01 100.0% 12.2%
3a1pB00 3.30.860.10 Alpha Beta › 2-Layer Sandwich › 30s Ribosomal Protein S19; Chain A › Ribosomal protein S19/S15 0.60 49.0 4.16e-01 100.0% 68.2%
4oa3A00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.56 46.0 3.44e-01 100.0% 58.2%
1ii2B01 3.40.449.10 Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 0.56 42.0 2.89e-01 84.8% 74.2%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 38.0 3.29e-01 73.9% 61.5%
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 42.0 2.59e-01 91.3% 87.0%
3oa5A01 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 38.0 2.86e-01 82.6% 53.8%
1a10I00 3.30.10.10 Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A 0.52 38.0 3.50e-01 84.8% 60.3%
7mi4A01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.52 38.0 2.73e-01 93.5% 35.4%
3w0eA00 3.30.10.10 Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A 0.51 38.0 3.42e-01 82.6% 54.4%
2ph7A02 3.40.50.10670 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › af2093 domain 0.50 39.0 3.33e-01 100.0% 87.5%
3umoA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 38.0 2.43e-01 93.5% 25.9%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3921177 3761.1.1.0 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.77 60.0 5.69e-01 97.8% 72.7%
3390077 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.71 60.0 4.22e-01 100.0% 73.8%
3528795 3761.1.1.0 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.70 55.0 5.64e-01 95.7% 91.1%
3405960 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.69 55.0 5.69e-01 100.0% 97.7%
3477642 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.68 57.0 4.29e-01 97.8% 45.0%
4379527 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.67 40.0 3.31e-01 91.3% 31.8%
2495545 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.66 59.0 3.35e-01 100.0% 11.0%
3623217 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.66 56.0 5.54e-01 100.0% 90.0%
4449615 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.65 38.0 3.09e-01 91.3% 27.8%
1505155 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.65 52.0 5.02e-01 95.7% 80.4%
4419934 4126.1.1.6 a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA 0.65 53.0 3.51e-01 100.0% 70.6%
3890372 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 53.0 4.13e-01 100.0% 50.0%
5010105 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.63 54.0 4.02e-01 100.0% 88.8%
5002640 3761.1.1.1 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.62 45.0 4.51e-01 84.8% 88.0%
4930407 869.1.1.1 a+b complex topology › Methenyltetrahydromethanopterin cyclohydrolase › Methenyltetrahydromethanopterin cyclohydrolase › Methenyltetrahydromethanopterin cyclohydrolase › MCH 0.61 45.0 2.88e-01 89.1% 32.5%
3577750 2007.1.16.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 0.61 45.0 3.39e-01 89.1% 80.0%
4026516 3105.1.1.4 a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › MOLO1 0.61 50.0 3.50e-01 100.0% 66.5%
3390232 384.1.1.0 few secondary structure elements › BPTI-like › BPTI-like › BPTI-like 0.60 41.0 4.07e-01 73.9% 66.0%
4522026 3585.1.1.0 a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain 0.60 42.0 3.91e-01 78.3% 66.2%
4379675 838.1.1.1 a+b two layers › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal_S19 0.60 49.0 4.00e-01 100.0% 58.0%
3989407 3585.1.1.0 a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain 0.60 45.0 4.14e-01 87.0% 69.2%
3290031 4126.1.1.1 a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA 0.60 48.0 3.17e-01 100.0% 72.2%
4502451 838.1.1.1 a+b two layers › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal_S19 0.60 48.0 4.08e-01 100.0% 64.4%
4178130 838.1.1.1 a+b two layers › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal_S19 0.60 49.0 4.08e-01 100.0% 64.4%
4072785 838.1.1.1 a+b two layers › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal_S19 0.59 50.0 4.11e-01 100.0% 60.0%
4525645 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.59 44.0 3.14e-01 91.3% 51.7%
1555595 838.1.1.1 a+b two layers › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal_S19 0.59 49.0 3.62e-01 100.0% 45.9%
4999472 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.58 45.0 3.12e-01 97.8% 22.6%
3652650 838.1.1.1 a+b two layers › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal_S19 0.58 48.0 3.78e-01 100.0% 45.5%
3838580 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.57 44.0 3.06e-01 91.3% 92.2%
3834784 838.1.1.0 a+b two layers › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal protein S19 0.56 46.0 3.20e-01 100.0% 26.5%
3696553 2004.5.1.0 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain 0.56 44.0 3.15e-01 95.7% 50.9%
3955312 323.1.1.5 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.56 45.0 2.97e-01 100.0% 53.5%
3916199 11.1.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Zona_pellucida 0.54 43.0 2.96e-01 97.8% 50.5%
1553362 838.1.1.1 a+b two layers › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal_S19 0.54 42.0 3.62e-01 100.0% 60.4%
3392280 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.54 38.0 2.34e-01 100.0% 13.0%
3719395 6110.1.1.1 alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.53 46.0 2.70e-01 100.0% 26.2%
3956765 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.53 40.0 2.56e-01 93.5% 55.9%
3590122 4999.1.1.1 beta barrels › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX 0.53 37.0 3.31e-01 100.0% 52.3%
3699229 6110.1.1.1 alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.52 45.0 2.60e-01 100.0% 20.2%
5000680 838.1.1.1 a+b two layers › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal_S19 0.52 39.0 3.13e-01 100.0% 44.6%
4032339 3585.1.1.0 a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain 0.52 39.0 3.49e-01 84.8% 65.7%
3259570 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 42.0 2.58e-01 100.0% 40.3%
3263356 838.1.1.1 a+b two layers › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal_S19 0.51 38.0 3.44e-01 100.0% 63.5%
3790194 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.51 35.0 3.61e-01 71.7% 100.0%
5014487 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.51 37.0 2.68e-01 100.0% 24.1%
None 0.50 41.0 2.72e-01 100.0% 34.0%
D2 medium residues 137-196_229-258
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 31.0 3.42e-01 81.1% 67.1%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.55 42.0 3.49e-01 81.1% 46.6%
7zgmA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 38.0 2.76e-01 72.2% 85.2%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.52 32.0 3.02e-01 84.4% 49.5%
5mteA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.51 43.0 3.77e-01 94.4% 88.3%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 33.0 3.62e-01 73.3% 80.0%
3fvzA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 44.0 2.95e-01 93.3% 80.5%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 39.0 2.69e-01 83.3% 81.9%
1rwiA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 37.0 2.75e-01 78.9% 72.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4959306 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 43.0 2.92e-01 83.3% 84.2%
3482862 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 48.0 3.60e-01 100.0% 82.5%
3940149 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 36.0 3.65e-01 70.0% 84.4%
3506615 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.53 42.0 3.18e-01 86.7% 90.9%
3496930 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 46.0 3.39e-01 100.0% 79.2%
3579494 5.1.5.171 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Str_synth 0.52 37.0 2.73e-01 76.7% 37.8%
D3 medium residues 285-323_373-431_455-521
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13385.14 best Laminin_G_3 29.7 9.00e-07 90.3% 81.5%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a8dA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 67.0 5.74e-01 100.0% 89.0%
1upsB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 53.0 4.50e-01 99.4% 96.6%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 4.72e-01 100.0% 100.0%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 37.0 2.97e-01 75.8% 80.2%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3761303 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 50.0 4.22e-01 91.5% 71.7%
D4 medium residues 647-775
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ic9A04 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.54 37.0 3.82e-01 100.0% 73.0%
8ajkA02 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 34.0 3.69e-01 97.7% 77.1%
6cmzB03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.52 36.0 3.72e-01 100.0% 77.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3629862 269.1.1.1 a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.60 55.0 4.50e-01 100.0% 63.9%
3276533 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 32.0 2.88e-01 100.0% 38.3%
1495188 219.2.1.1 a+b complex topology › Cysteine proteinases-like › 2B protein soluble domain › 2B protein soluble domain › 2B_soluble 0.54 29.0 2.86e-01 100.0% 45.1%
3739140 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.54 30.0 3.69e-01 99.2% 95.7%
389937 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.52 31.0 3.51e-01 100.0% 77.0%
3796820 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.51 31.0 3.66e-01 99.2% 89.4%
152904 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.51 30.0 3.54e-01 100.0% 85.1%
3801221 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.51 30.0 3.48e-01 100.0% 78.9%
1208100 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.51 30.0 3.52e-01 100.0% 86.2%
3325324 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.50 30.0 3.46e-01 100.0% 83.1%