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KU708004.1__AMW64490.1__AH14a_p30__00030

Bact-Vir

KU708004.1__AMW64490.1__AH14a_p30__00030

Identity

Accession:
KU708004 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Miecznikowavirus› Pseudomonas_phage_phiAH14a

TaxID: 1805958

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 64-118
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nv8B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.77 55.0 4.99e-01 74.5% 60.6%
1vw4801 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.76 52.0 4.78e-01 72.7% 54.8%
4mb7A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.75 56.0 4.12e-01 81.8% 30.6%
3w0fA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.75 56.0 4.22e-01 81.8% 33.1%
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.70 53.0 5.06e-01 83.6% 69.2%
3eeeA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.69 50.0 3.46e-01 78.2% 41.5%
3h7lB02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.66 47.0 2.76e-01 81.8% 8.7%
3d6jA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 47.0 4.43e-01 81.8% 92.5%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.63 56.0 3.49e-01 100.0% 38.9%
4olsA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.62 49.0 3.44e-01 89.1% 47.0%
8f4cA01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.59 43.0 3.32e-01 80.0% 66.9%
1zq9A02 1.10.8.480 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 41.0 3.47e-01 81.8% 73.5%
4nheB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 42.0 3.37e-01 87.3% 95.6%
3vkgA09 1.20.920.30 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.52 43.0 3.22e-01 94.5% 40.3%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3518339 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.75 53.0 5.79e-01 81.8% 91.1%
3592444 4120.1.1.0 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.74 55.0 5.36e-01 81.8% 73.3%
3947908 4275.1.1.1 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_connect_1 0.66 50.0 4.19e-01 80.0% 52.2%
4026529 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.66 53.0 3.34e-01 89.1% 20.3%
3625007 189.1.1.2 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.63 48.0 3.21e-01 96.4% 21.4%
3378684 213.1.1.72 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_10 0.60 50.0 3.51e-01 96.4% 62.1%
4966557 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 47.0 2.88e-01 94.5% 36.1%
3786043 2484.1.1.20 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.51 44.0 2.93e-01 100.0% 88.4%
5026932 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.50 35.0 3.59e-01 72.7% 81.8%
3625595 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 34.0 3.48e-01 78.2% 74.5%
D2 medium residues 3-55
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ctdA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.70 48.0 3.96e-01 71.7% 65.6%
4bmjA00 6.20.250.40 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.61 44.0 4.21e-01 77.4% 91.9%
2mdgA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.61 47.0 4.67e-01 88.7% 96.4%
1x6hA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.58 46.0 4.00e-01 88.7% 67.4%
2cshA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.56 39.0 3.26e-01 86.8% 43.3%
4q28A00 3.30.160.780 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 34.0 2.72e-01 75.5% 30.0%
2lv2A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 42.0 3.63e-01 90.6% 69.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3922034 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.82 51.0 5.74e-01 71.7% 85.0%
3535881 386.1.1.145 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZN142 0.63 41.0 4.08e-01 81.1% 63.6%
3780096 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.63 42.0 3.92e-01 86.8% 56.9%
3544960 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.60 43.0 3.63e-01 79.2% 45.6%
3414376 386.1.1.238 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_6 0.59 46.0 3.79e-01 84.9% 69.5%
3397207 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.59 40.0 2.94e-01 77.4% 25.5%
4014357 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 43.0 3.69e-01 88.7% 50.6%
3760118 386.1.1.24 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_4 0.57 49.0 4.07e-01 98.1% 65.3%
3637640 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.53 43.0 3.62e-01 90.6% 61.1%
3882254 386.1.1.238 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_6 0.53 43.0 3.77e-01 96.2% 68.2%
3260450 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 37.0 3.53e-01 79.2% 83.1%