Back to structures

KU708004.1__AMW64495.1__AH14a_p35__00035

Bact-Vir

KU708004.1__AMW64495.1__AH14a_p35__00035

Identity

Accession:
KU708004 ↗
Kingdom:
phage

Quality

70.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-135
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l6wB01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.78 55.0 4.54e-01 73.0% 88.5%
5vipB01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.74 51.0 3.92e-01 72.0% 82.2%
1pixA03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.74 52.0 3.68e-01 73.0% 76.6%
3jcmN01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 63.0 4.72e-01 94.0% 97.8%
1x0uA02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.72 51.0 3.74e-01 73.0% 80.5%
3zl8A03 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.71 60.0 5.32e-01 90.0% 95.7%
3u9rB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.70 50.0 3.66e-01 74.0% 81.4%
2lciA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.68 51.0 4.57e-01 77.0% 74.6%
4d86A01 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.68 55.0 4.39e-01 85.0% 98.9%
1yd9B00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.68 56.0 4.48e-01 87.0% 98.4%
4iqyB00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.67 55.0 4.24e-01 88.0% 85.4%
1ohcA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.67 56.0 4.72e-01 92.0% 79.9%
5t5dA00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.66 48.0 4.21e-01 76.0% 87.3%
3cxgA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.65 45.0 4.22e-01 74.0% 58.2%
5kivA01 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.65 53.0 4.23e-01 87.0% 100.0%
3bl4A02 3.40.970.30 Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › yp_829618.1 like domains 0.64 32.0 4.32e-01 91.0% 100.0%
7wjlA01 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.63 56.0 3.68e-01 100.0% 96.9%
7q1bA01 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.63 55.0 3.78e-01 98.0% 98.9%
1r6hA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.63 52.0 4.41e-01 91.0% 76.2%
2bhsB01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 47.0 4.01e-01 80.0% 94.2%
5ji5A00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.63 54.0 3.87e-01 96.0% 100.0%
3lfjB00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.63 48.0 4.10e-01 82.0% 84.9%
6z6fA01 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.61 51.0 3.51e-01 94.0% 90.5%
2vccA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 42.0 2.98e-01 73.0% 98.5%
8g3hA01 3.20.20.330 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain 0.59 50.0 3.55e-01 92.0% 99.3%
3ahcA02 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.59 47.0 3.69e-01 86.0% 82.1%
5lstA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 49.0 3.95e-01 97.0% 94.0%
5o5qB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 40.0 3.53e-01 71.0% 87.2%
6s8oB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 47.0 3.80e-01 92.0% 87.3%
1npdB01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.58 41.0 3.77e-01 76.0% 58.0%
8alzB05 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 47.0 3.82e-01 92.0% 87.3%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 36.0 3.34e-01 93.0% 51.6%
1jmvA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 41.0 3.71e-01 74.0% 94.3%
2v1xA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 47.0 3.71e-01 91.0% 96.4%
2ob0C01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 39.0 3.41e-01 73.0% 72.8%
2gzaB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 49.0 3.93e-01 100.0% 90.6%
1a5tA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 46.0 3.93e-01 90.0% 91.6%
2dx6A00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.55 49.0 4.25e-01 100.0% 98.7%
2gzsA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 41.0 3.14e-01 79.0% 73.1%
6yhrA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 45.0 3.68e-01 90.0% 90.2%
1w1wA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 47.0 3.46e-01 95.0% 98.9%
4fpvB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.55 39.0 2.97e-01 75.0% 68.5%
4s3jB02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 47.0 3.45e-01 96.0% 97.8%
4l5rC02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 3.78e-01 98.0% 78.7%
3ct6A00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.52 38.0 3.56e-01 79.0% 93.8%
4fvaC00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.52 42.0 3.15e-01 88.0% 69.7%
3wbkB03 3.40.50.10050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor IF- 2, domain 3 0.52 36.0 3.49e-01 73.0% 89.6%
5dh0A01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.51 36.0 3.47e-01 73.0% 89.7%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 32.0 3.65e-01 100.0% 86.3%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4192171 7570.1.1.1 a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C 0.73 61.0 5.23e-01 90.0% 97.4%
3254438 7529.1.1.1 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.69 58.0 4.51e-01 89.0% 90.7%
3961772 2486.1.1.3 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.69 49.0 3.76e-01 73.0% 87.7%
4947078 7529.1.1.1 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.69 54.0 4.39e-01 83.0% 96.7%
4771694 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.68 51.0 4.57e-01 77.0% 74.6%
3379625 148.1.3.1 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › NB-ARC 0.68 37.0 3.03e-01 73.0% 30.6%
1877435 2486.1.1.15 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans, ACCA 0.68 49.0 3.70e-01 75.0% 81.3%
4999380 7515.1.1.6 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest 0.68 48.0 3.43e-01 74.0% 90.7%
5049163 7529.1.1.1 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.68 48.0 4.04e-01 74.0% 100.0%
5049732 7529.1.1.1 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.67 50.0 4.09e-01 78.0% 98.9%
4954827 2002.3.1.0 a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase 0.66 50.0 3.77e-01 80.0% 80.4%
4945359 7529.1.1.1 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.65 50.0 4.15e-01 82.0% 100.0%
3425860 2004.1.1.56 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.64 53.0 3.93e-01 90.0% 56.9%
3320649 2004.1.1.56 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.64 53.0 4.80e-01 92.0% 87.1%
4003459 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.63 45.0 3.50e-01 75.0% 64.8%
3802413 2004.1.1.56 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.63 52.0 3.85e-01 89.0% 59.2%
3411950 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.62 46.0 3.45e-01 78.0% 87.5%
3357810 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.62 46.0 3.92e-01 78.0% 73.9%
3310100 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 49.0 4.46e-01 90.0% 77.9%
3837720 2004.1.1.56 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.60 49.0 4.15e-01 89.0% 78.8%
3653506 2004.1.1.56 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.60 50.0 4.83e-01 92.0% 88.7%
3307789 2004.1.1.56 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.59 48.0 4.38e-01 88.0% 82.2%
3680604 246.3.1.17 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › PF27823 0.59 41.0 3.00e-01 72.0% 61.1%
3443027 2004.1.1.56 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.59 48.0 4.17e-01 91.0% 90.3%
4418276 2006.1.5.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Arginase 0.58 49.0 3.64e-01 96.0% 74.5%
3276547 7585.1.1.1 a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 0.58 44.0 3.60e-01 81.0% 94.1%
4118994 2007.1.7.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › DHQ_synthase 0.58 50.0 4.19e-01 97.0% 83.4%
3512874 2004.1.1.14 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.57 48.0 3.73e-01 95.0% 97.1%
3337044 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.57 43.0 3.03e-01 80.0% 82.8%
4679174 2007.1.7.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › DHQ_synthase 0.57 48.0 4.08e-01 94.0% 84.7%
3474422 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 37.0 3.24e-01 93.0% 47.1%
3848077 207.1.1.47 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_6 0.56 40.0 3.10e-01 76.0% 50.4%
9663 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.56 47.0 3.36e-01 95.0% 52.6%
3471855 7585.1.1.1 a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 0.56 42.0 3.36e-01 81.0% 88.8%
3919946 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.56 47.0 3.60e-01 95.0% 96.4%
5056794 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.55 39.0 3.31e-01 73.0% 79.4%
3408841 7516.1.1.111 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Stealth_CR2, Stealth_CR1, Stealth_CR3, Stealth_CR4 0.55 46.0 3.23e-01 93.0% 83.6%
223677 7529.1.1.1 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.55 48.0 4.14e-01 100.0% 94.6%
4246539 2007.1.7.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › DHQ_synthase 0.55 47.0 3.98e-01 97.0% 84.6%
None 0.55 45.0 3.69e-01 92.0% 61.0%
4437313 2004.1.1.343 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 0.54 45.0 3.63e-01 92.0% 59.5%
5066133 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.53 44.0 3.26e-01 90.0% 100.0%
3788545 7585.1.1.1 a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 0.53 44.0 3.36e-01 89.0% 86.1%
3665654 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.53 40.0 3.63e-01 80.0% 60.0%
None 0.53 46.0 3.52e-01 100.0% 94.4%
3588072 7523.1.1.15 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.52 37.0 3.67e-01 82.0% 70.5%
4965223 2004.1.1.88 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW 0.52 44.0 3.52e-01 100.0% 71.7%
3212469 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 40.0 3.69e-01 99.0% 64.6%
5072684 231.1.4.2 a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Apc (acetophenone carboxylase) beta subunit middle domain › DUF2070 0.51 34.0 3.48e-01 80.0% 69.0%
3484053 2006.1.2.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases 0.50 43.0 3.25e-01 98.0% 43.3%