←Back to structures
KU728633.1__AMQ66978.1__SEA_BIPPER_43__00042
Bact-VirKU728633.1__AMQ66978.1__SEA_BIPPER_43__00042
Identity
- Accession:
- KU728633 ↗
- Kingdom:
- phage
Quality
65.4
mean pLDDT
Taxonomy
TaxID: 1805457
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-75
Domain cluster:
rep: IMGVR_UViG_3300029202_000224-3300029202-Ga0167843_10153815__D2-64
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5z06B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 48.0 | 4.37e-01 | 71.8% | 53.3% |
| 2db8A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 44.0 | 3.82e-01 | 70.4% | 41.8% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.65 | 44.0 | 4.58e-01 | 70.4% | 85.7% |
| 1nfdA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 44.0 | 3.80e-01 | 71.8% | 61.6% |
| 3pv7A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 42.0 | 3.87e-01 | 71.8% | 63.8% |
| 4eq3A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 41.0 | 3.76e-01 | 71.8% | 55.1% |
| 1tdqA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 41.0 | 3.87e-01 | 71.8% | 56.7% |
| 1qfoC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 41.0 | 3.55e-01 | 71.8% | 58.8% |
| 4lizA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.59 | 47.0 | 3.81e-01 | 87.3% | 45.7% |
| 2pn5A02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.57 | 39.0 | 3.49e-01 | 70.4% | 51.5% |
| 2nytD00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.57 | 41.0 | 3.17e-01 | 78.9% | 83.2% |
| 2xtlA02 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.57 | 38.0 | 3.50e-01 | 71.8% | 50.5% |
| 2mj0A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.56 | 43.0 | 4.41e-01 | 100.0% | 93.9% |
| 4do8A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.54 | 42.0 | 4.32e-01 | 100.0% | 93.9% |
| 1cfyA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.54 | 43.0 | 3.55e-01 | 87.3% | 57.1% |
| 5e4eC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 37.0 | 3.31e-01 | 71.8% | 50.5% |
| 4bfkA00 | 2.60.40.730 | Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain | 0.52 | 44.0 | 3.62e-01 | 91.5% | 90.3% |
| 2kd7A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 45.0 | 3.49e-01 | 95.8% | 49.7% |
| 2dduA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 43.0 | 3.42e-01 | 94.4% | 60.0% |
| 2e26A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 42.0 | 3.35e-01 | 93.0% | 56.8% |
| 6ncyA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 34.0 | 3.15e-01 | 100.0% | 53.3% |
| 2hlcA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 33.0 | 2.98e-01 | 70.4% | 44.2% |
| 2re9A01 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 43.0 | 3.37e-01 | 94.4% | 77.1% |
| 3hrzC01 | 2.20.210.20 | Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › | 0.51 | 31.0 | 3.58e-01 | 70.4% | 89.8% |
| 3tcaA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 34.0 | 3.26e-01 | 73.2% | 83.3% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4937311 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.71 | 48.0 | 4.42e-01 | 71.8% | 54.4% |
| 3935631 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.71 | 57.0 | 4.92e-01 | 88.7% | 89.6% |
| 3609893 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 51.0 | 4.39e-01 | 90.1% | 80.9% |
| 4393604 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.61 | 49.0 | 3.91e-01 | 88.7% | 60.1% |
| 3385725 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 41.0 | 3.56e-01 | 71.8% | 55.7% |
| 3744648 | 11.1.1.470 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Psg1 | 0.60 | 41.0 | 3.72e-01 | 71.8% | 57.0% |
| 4960810 | 3352.1.1.51 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › AglB_core-like | 0.58 | 50.0 | 2.86e-01 | 98.6% | 96.3% |
| 5076895 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.57 | 46.0 | 4.09e-01 | 93.0% | 70.0% |
| 3414967 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.57 | 38.0 | 3.07e-01 | 70.4% | 35.9% |
| 3415354 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.56 | 47.0 | 4.34e-01 | 91.5% | 100.0% |
| 5002747 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.56 | 41.0 | 3.18e-01 | 83.1% | 43.8% |
| 3433959 | 11.2.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 | 0.56 | 40.0 | 3.62e-01 | 77.5% | 100.0% |
| 3907468 | 382.1.1.2 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP | 0.54 | 42.0 | 4.14e-01 | 100.0% | 81.2% |
| 3941016 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 45.0 | 3.70e-01 | 94.4% | 73.3% |
| 3917729 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.53 | 43.0 | 4.20e-01 | 100.0% | 91.8% |
| 3874618 | 10.1.1.10 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM | 0.52 | 44.0 | 3.35e-01 | 95.8% | 46.1% |
| 3630093 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.52 | 45.0 | 4.48e-01 | 100.0% | 98.7% |
| 3216375 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.52 | 44.0 | 4.20e-01 | 98.6% | 91.8% |
| 3576888 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.51 | 42.0 | 3.62e-01 | 100.0% | 86.9% |
| 3757701 | 382.1.1.3 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Activin_recp | 0.50 | 42.0 | 4.10e-01 | 100.0% | 91.3% |
| 3520074 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.50 | 41.0 | 3.90e-01 | 94.4% | 93.3% |
| 3796687 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.50 | 42.0 | 4.14e-01 | 100.0% | 91.3% |
D2
high
residues 261-310
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ej6A04 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 43.0 | 2.93e-01 | 100.0% | 50.4% |
| 7zj3D01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 41.0 | 3.66e-01 | 98.0% | 70.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4374415 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.56 | 38.0 | 3.43e-01 | 74.0% | 61.3% |
| 3748180 | 376.1.6.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain | 0.53 | 35.0 | 3.52e-01 | 72.0% | 64.0% |
| 3521358 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.51 | 43.0 | 3.82e-01 | 100.0% | 73.3% |
| 3806899 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.50 | 35.0 | 3.22e-01 | 78.0% | 65.3% |
| 2756659 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.50 | 40.0 | 2.62e-01 | 92.0% | 33.2% |