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KU747973.1__ANI22087.1__H401_70__00070

Bact-Vir

KU747973.1__ANI22087.1__H401_70__00070

Identity

Accession:
KU747973 ↗
Kingdom:
phage

Quality

85.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudoalteromonas_phage_vB_PspS-H40/1

TaxID: 1856120

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-109
PDB
Domain cluster: rep: JF974287.1__AGH16073.1__VPKG_00036__00036__D4-109
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19759.5 best DUF6246 34.6 2.30e-08 58.9% 31.0%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h79A00 1.10.520.40 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › CRISPR-associated protein Cse2 0.55 40.0 3.40e-01 94.4% 45.8%
3b34A05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.51 37.0 2.64e-01 77.6% 37.2%
6n6qD00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.50 44.0 2.98e-01 100.0% 68.0%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5055185 4120.1.1.0 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.64 34.0 4.27e-01 70.1% 90.0%
5044421 592.2.1.0 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like 0.58 34.0 3.81e-01 91.6% 75.0%
4025011 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.56 35.0 3.39e-01 83.2% 54.2%
4886674 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.55 36.0 3.88e-01 98.1% 78.9%
4045124 7014.1.1.2 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.53 38.0 2.88e-01 74.8% 69.6%
4614412 2498.5.1.0 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.53 35.0 3.89e-01 100.0% 85.9%
3807799 320.4.1.3 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB 0.51 43.0 4.10e-01 94.4% 86.4%
3707907 320.4.1.3 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB 0.51 40.0 3.93e-01 85.0% 93.0%
D2 medium residues 129-195
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19759.5 best DUF6246 33.8 4.20e-08 79.1% 24.1%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o6zA01 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.53 44.0 3.39e-01 95.5% 70.8%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4982863 141.1.1.1 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt 0.54 38.0 2.43e-01 74.6% 41.4%
5050228 7014.1.1.2 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.52 43.0 3.56e-01 97.0% 100.0%
4964562 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.51 36.0 2.99e-01 77.6% 47.4%