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KU760857.1__AMR59976.1__J46_0058__00058
Bact-VirKU760857.1__AMR59976.1__J46_0058__00058
Identity
- Accession:
- KU760857 ↗
- Kingdom:
- phage
Quality
90.7
mean pLDDT
Taxonomy
TaxID: 1815968
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-185
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04607.24 best | RelA_SpoT | 40.9 | 3.10e-10 | 58.4% | 79.7% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7ztbB01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.97 | 81.0 | 8.63e-01 | 91.4% | 96.3% |
| 2be3B01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.81 | 57.0 | 6.69e-01 | 78.9% | 98.5% |
| 6fgjA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.79 | 62.0 | 6.83e-01 | 80.0% | 98.0% |
| 4wcwA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.79 | 41.0 | 5.27e-01 | 74.6% | 84.7% |
| 2id1A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.79 | 40.0 | 5.24e-01 | 72.4% | 86.5% |
| 2o5aA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.78 | 39.0 | 5.17e-01 | 73.5% | 86.3% |
| 1vj7B02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.78 | 49.0 | 6.09e-01 | 84.3% | 99.2% |
| 3upsA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.75 | 38.0 | 4.90e-01 | 72.4% | 83.3% |
| 7qprA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.74 | 51.0 | 5.83e-01 | 87.0% | 94.8% |
| 3h37A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.69 | 37.0 | 4.12e-01 | 98.4% | 65.5% |
| 5b3pA00 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.62 | 33.0 | 3.87e-01 | 72.4% | 70.1% |
| 3bioA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.62 | 29.0 | 3.54e-01 | 92.4% | 66.7% |
| 2ia7A00 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 31.0 | 3.91e-01 | 97.8% | 94.6% |
| 2o5vA02 | 1.20.1050.90 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › RecF/RecN/SMC, N-terminal domain | 0.53 | 41.0 | 4.20e-01 | 88.1% | 84.1% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3955935 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.85 | 65.0 | 6.10e-01 | 91.4% | 65.9% |
| 4968492 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.82 | 63.0 | 4.57e-01 | 85.4% | 32.1% |
| 6825 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.81 | 62.0 | 5.96e-01 | 80.5% | 70.9% |
| 3367594 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.79 | 56.0 | 5.67e-01 | 84.3% | 73.3% |
| 3589006 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.79 | 56.0 | 5.55e-01 | 84.3% | 68.7% |
| 4169713 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.79 | 63.0 | 6.10e-01 | 82.7% | 74.6% |
| 6824 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.77 | 54.0 | 6.08e-01 | 83.8% | 91.0% |
| 4196711 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.77 | 55.0 | 5.58e-01 | 84.3% | 74.4% |
| 3838458 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.76 | 55.0 | 5.66e-01 | 85.4% | 76.7% |
| 5077937 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.71 | 38.0 | 4.49e-01 | 97.3% | 73.8% |
| 5072129 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.65 | 38.0 | 4.32e-01 | 95.1% | 77.0% |
| 4144097 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.59 | 42.0 | 3.42e-01 | 72.4% | 43.7% |
| 4138585 | 2004.1.1.429 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 | 0.59 | 42.0 | 3.38e-01 | 72.4% | 42.6% |
| 4045276 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.56 | 43.0 | 3.46e-01 | 84.3% | 40.8% |
| 4658924 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.55 | 43.0 | 3.43e-01 | 84.3% | 41.1% |
| 4141336 | 2004.1.1.478 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15, AAA_21 | 0.55 | 42.0 | 3.47e-01 | 84.3% | 43.9% |
| 4545908 | 2004.1.1.429 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 | 0.52 | 42.0 | 3.42e-01 | 85.4% | 44.7% |
| 5059032 | 4070.1.1.0 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like | 0.51 | 40.0 | 3.97e-01 | 89.2% | 77.4% |
| 3228470 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.51 | 33.0 | 3.79e-01 | 98.9% | 86.4% |
| 3965272 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.50 | 29.0 | 3.72e-01 | 96.8% | 100.0% |
D2
high
residues 188-261_359-371
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fflA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.77 | 47.0 | 4.11e-01 | 71.3% | 42.9% |
| 2dbaA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.71 | 40.0 | 3.63e-01 | 72.4% | 41.5% |
| 1hx8A02 | 1.20.58.150 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › ANTH domain | 0.68 | 48.0 | 4.33e-01 | 72.4% | 91.5% |
| 7c1iA01 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.64 | 41.0 | 3.95e-01 | 83.9% | 56.0% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 50.0 | 5.08e-01 | 100.0% | 89.4% |
| 6a3kA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.62 | 48.0 | 4.19e-01 | 81.6% | 69.0% |
| 3tl4X02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.62 | 32.0 | 3.48e-01 | 97.7% | 59.7% |
| 1cgnA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.61 | 48.0 | 4.21e-01 | 82.8% | 70.2% |
| 2wmoA01 | 1.25.40.410 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DOCK DHR2 domain, lobe A | 0.61 | 43.0 | 3.77e-01 | 93.1% | 48.5% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.60 | 43.0 | 4.48e-01 | 100.0% | 82.3% |
| 2jx0A00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.60 | 45.0 | 3.91e-01 | 79.3% | 58.8% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.57 | 39.0 | 4.06e-01 | 71.3% | 79.2% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.57 | 46.0 | 4.04e-01 | 86.2% | 74.4% |
| 7eq1R01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.57 | 46.0 | 3.30e-01 | 92.0% | 82.5% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.57 | 45.0 | 4.55e-01 | 97.7% | 89.7% |
| 4yvoA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 42.0 | 3.88e-01 | 81.6% | 89.1% |
| 4mdcD02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 44.0 | 3.99e-01 | 87.4% | 76.4% |
| 7xuxB01 | 1.10.3290.10 | Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain | 0.54 | 48.0 | 3.55e-01 | 100.0% | 83.5% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 47.0 | 4.10e-01 | 100.0% | 87.2% |
| 2qytA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.53 | 45.0 | 4.33e-01 | 100.0% | 82.2% |
| 3hiuD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 38.0 | 3.28e-01 | 79.3% | 80.9% |
| 1wgwA00 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.52 | 34.0 | 3.33e-01 | 79.3% | 60.6% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.51 | 39.0 | 3.92e-01 | 82.8% | 85.2% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.51 | 39.0 | 3.79e-01 | 83.9% | 84.0% |
| 1zu2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 44.0 | 3.68e-01 | 98.9% | 77.8% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3874961 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.76 | 47.0 | 3.45e-01 | 71.3% | 25.7% |
| 3376126 | 109.4.1.1718 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26716 | 0.75 | 52.0 | 4.72e-01 | 72.4% | 70.4% |
| 3484616 | 109.42.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › E3 ubiquitin-protein ligase SHPRH first helical domain › E3 ubiquitin-protein ligase SHPRH first helical domain › SHPRH_helical-1st | 0.74 | 50.0 | 4.11e-01 | 72.4% | 41.4% |
| 3276887 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.66 | 53.0 | 4.79e-01 | 83.9% | 81.7% |
| 3969284 | 633.28.1.2 ↗ | alpha bundles › Bromodomain-like › Tsi6 › Tsi6 › DUF4404 | 0.63 | 51.0 | 5.30e-01 | 98.9% | 96.2% |
| 3598538 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.63 | 40.0 | 4.47e-01 | 83.9% | 86.2% |
| 3595737 | 109.4.1.218 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP | 0.62 | 44.0 | 3.72e-01 | 74.7% | 68.0% |
| 5022006 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.62 | 45.0 | 3.48e-01 | 77.0% | 63.1% |
| 3447427 | 616.1.1.1 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 | 0.60 | 50.0 | 4.27e-01 | 90.8% | 56.4% |
| 4414831 | 633.13.1.1 ↗ | alpha bundles › Bromodomain-like › DsbB-like › DsbB-like › DsbB | 0.59 | 52.0 | 4.30e-01 | 100.0% | 83.5% |
| 5049373 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.59 | 50.0 | 4.06e-01 | 98.9% | 88.3% |
| 3616671 | 604.1.1.155 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF29142 | 0.58 | 45.0 | 4.44e-01 | 82.8% | 77.9% |
| 3605147 | 1189.1.1.1 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › Trypan_glycop | 0.58 | 40.0 | 2.78e-01 | 71.3% | 46.5% |
| 4996192 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.58 | 52.0 | 4.49e-01 | 100.0% | 69.6% |
| 3987865 | 5086.1.1.192 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF7649 | 0.58 | 38.0 | 3.91e-01 | 72.4% | 69.4% |
| 5083908 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.57 | 45.0 | 4.14e-01 | 88.5% | 86.7% |
| 3448231 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 41.0 | 3.38e-01 | 77.0% | 55.0% |
| 3376861 | 109.4.1.2332 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, DYW_deaminase | 0.56 | 48.0 | 3.62e-01 | 97.7% | 38.7% |
| 3610769 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.56 | 42.0 | 3.66e-01 | 79.3% | 53.1% |
| 3630440 | 109.4.1.1328 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26034 | 0.55 | 42.0 | 3.90e-01 | 83.9% | 87.0% |
| 4000066 | 633.19.1.0 ↗ | alpha bundles › Bromodomain-like › Hypothetical protein lpg2422 helical bundle domain › Hypothetical protein lpg2422 helical bundle domain | 0.55 | 45.0 | 3.95e-01 | 96.6% | 58.6% |
| 3402740 | 102.1.3.8 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › Mab-21_C | 0.54 | 43.0 | 3.73e-01 | 87.4% | 75.7% |
| 4651114 | 109.4.1.1136 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_PRP39_N | 0.54 | 41.0 | 3.28e-01 | 81.6% | 65.0% |
| 3347896 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.54 | 40.0 | 2.65e-01 | 79.3% | 22.5% |
| 4088340 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 47.0 | 4.03e-01 | 96.6% | 92.9% |
| 4889682 | 11.2.1.20 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › FerB | 0.54 | 40.0 | 3.33e-01 | 78.2% | 49.0% |
| 4998043 | 633.29.1.13 ↗ | alpha bundles › Bromodomain-like › Putative uncharacterized protein PAV1-137 › Putative uncharacterized protein PAV1-137 › DUF2096_N | 0.53 | 44.0 | 4.31e-01 | 95.4% | 94.0% |
| 3455535 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.53 | 41.0 | 3.31e-01 | 82.8% | 56.6% |
| 3652824 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 39.0 | 3.74e-01 | 79.3% | 88.0% |
| 3372157 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.52 | 37.0 | 3.74e-01 | 98.9% | 75.3% |
| 3551840 | 109.4.1.190 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6 | 0.51 | 47.0 | 3.40e-01 | 98.9% | 41.3% |
| 4579981 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.51 | 43.0 | 4.08e-01 | 98.9% | 89.1% |
| 4213337 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.50 | 39.0 | 3.75e-01 | 85.1% | 73.0% |
D3
high
residues 266-355
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8d8lF01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.70 | 49.0 | 4.41e-01 | 72.2% | 91.9% |
| 2oo3A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 47.0 | 3.35e-01 | 78.9% | 41.2% |
| 7y8sB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 39.0 | 4.01e-01 | 76.7% | 65.5% |
| 2zewB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.61 | 39.0 | 3.30e-01 | 72.2% | 38.8% |
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 44.0 | 4.40e-01 | 78.9% | 97.9% |
| 2mheA00 | 3.30.70.2400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF13773, DUF4170 | 0.59 | 40.0 | 4.40e-01 | 71.1% | 89.2% |
| 1ywhA01 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.59 | 45.0 | 4.69e-01 | 93.3% | 92.6% |
| 2ia0B02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.59 | 41.0 | 4.00e-01 | 72.2% | 84.8% |
| 2dbbA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.58 | 41.0 | 4.14e-01 | 74.4% | 96.8% |
| 2efpA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.57 | 40.0 | 3.92e-01 | 73.3% | 87.8% |
| 1uenA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 40.0 | 3.59e-01 | 80.0% | 52.0% |
| 1s3rA04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.55 | 41.0 | 3.83e-01 | 77.8% | 64.9% |
| 2ypyA00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.55 | 43.0 | 3.81e-01 | 85.6% | 97.0% |
| 5jheA01 | 2.40.100.10 | Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like | 0.55 | 39.0 | 3.04e-01 | 75.6% | 97.5% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 36.0 | 3.93e-01 | 72.2% | 84.2% |
| 3r5dA01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 40.0 | 3.55e-01 | 80.0% | 77.5% |
| 2wliA02 | 2.60.40.1400 | Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 | 0.53 | 39.0 | 3.29e-01 | 78.9% | 54.0% |
| 1vx7G00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.53 | 37.0 | 3.42e-01 | 75.6% | 87.1% |
| 1hq6B00 | 3.50.20.10 | Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B | 0.52 | 45.0 | 3.43e-01 | 100.0% | 48.7% |
| 6x3aA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 37.0 | 3.60e-01 | 78.9% | 66.3% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 34.0 | 3.80e-01 | 70.0% | 91.5% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3261098 | 11.2.1.32 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DOCK_N | 0.71 | 52.0 | 4.07e-01 | 76.7% | 96.8% |
| 3570332 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.66 | 42.0 | 3.91e-01 | 71.1% | 50.4% |
| 3824339 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 44.0 | 3.58e-01 | 71.1% | 37.6% |
| 4979727 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.64 | 44.0 | 4.50e-01 | 71.1% | 90.6% |
| 3673136 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 44.0 | 3.73e-01 | 72.2% | 55.9% |
| 3227513 | 3115.1.1.3 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › NRF | 0.62 | 48.0 | 4.61e-01 | 83.3% | 79.0% |
| 3210907 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.61 | 51.0 | 5.02e-01 | 92.2% | 91.6% |
| 3540023 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.61 | 48.0 | 4.84e-01 | 85.6% | 92.2% |
| 3896560 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.58 | 43.0 | 3.53e-01 | 78.9% | 51.8% |
| 4938152 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.58 | 38.0 | 4.50e-01 | 71.1% | 100.0% |
| 3857592 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.57 | 46.0 | 4.67e-01 | 91.1% | 92.2% |
| 4965183 | 11.1.1.1432 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26259 | 0.57 | 37.0 | 3.79e-01 | 78.9% | 68.2% |
| 3754054 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.56 | 37.0 | 3.68e-01 | 76.7% | 63.2% |
| 3990772 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.56 | 39.0 | 3.66e-01 | 80.0% | 59.1% |
| 3492718 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.56 | 47.0 | 4.62e-01 | 98.9% | 88.0% |
| 3413240 | 3115.1.1.3 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › NRF | 0.55 | 43.0 | 3.68e-01 | 88.9% | 63.7% |
| 3874464 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.54 | 46.0 | 3.12e-01 | 94.4% | 49.9% |
| 3702051 | 1116.1.1.0 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain | 0.53 | 40.0 | 3.17e-01 | 81.1% | 55.0% |
| 4128974 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.53 | 37.0 | 3.84e-01 | 72.2% | 85.0% |
| 3245879 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.53 | 31.0 | 2.60e-01 | 70.0% | 31.2% |
| 2831852 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.52 | 36.0 | 3.48e-01 | 71.1% | 63.4% |
| 3549945 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 38.0 | 3.41e-01 | 76.7% | 73.1% |
| 4871072 | 2492.1.1.23 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NAD2 | 0.52 | 44.0 | 3.57e-01 | 98.9% | 80.6% |
| 4942869 | 303.1.1.1 ↗ | a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC | 0.52 | 44.0 | 3.69e-01 | 98.9% | 92.9% |
| 3858827 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 34.0 | 3.44e-01 | 80.0% | 66.7% |
| 3224264 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.51 | 44.0 | 4.46e-01 | 97.8% | 100.0% |