←Back to structures

KU836751.1__AMR60106.1__LEO2_68__00068

Bact-Vir

KU836751.1__AMR60106.1__LEO2_68__00068

Identity

Accession:
KU836751 ↗
Kingdom:
phage

Quality

62.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ehrlichviridae› Andromedavirus› Bacillus_phage_Leo2

TaxID: 1815973

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-72
PDB
Domain cluster: rep: OQ921340.1__WIT26700.1__X__00108__D14-71
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ragA02 1.10.10.430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily 0.67 54.0 5.25e-01 95.2% 80.9%
2gxaE01 1.10.10.510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain 0.63 50.0 4.84e-01 90.3% 79.5%
2oebA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.61 52.0 4.03e-01 100.0% 86.8%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.61 50.0 5.09e-01 93.5% 95.1%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 41.0 4.43e-01 95.2% 90.0%
2vkhA03 1.10.10.1780 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 47.0 4.52e-01 95.2% 73.9%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 47.0 4.71e-01 85.5% 95.2%
4cs9B02 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.58 40.0 3.39e-01 95.2% 42.1%
1fcdC01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.57 45.0 4.30e-01 93.5% 92.3%
1g7dA00 1.20.1150.12 Mainly Alpha › Up-down Bundle › Endoplasmic reticulum protein erp29 › Endoplasmic reticulum resident protein 29, C-terminal domain 0.56 46.0 3.93e-01 93.5% 98.1%
1zc6A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 43.0 3.22e-01 91.9% 34.0%
1xd4A04 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.55 44.0 3.13e-01 93.5% 27.1%
4c23B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 45.0 3.07e-01 91.9% 41.5%
4xi0F00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 39.0 2.85e-01 88.7% 27.0%
4x28C01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.54 44.0 3.70e-01 98.4% 68.9%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.53 45.0 3.94e-01 98.4% 81.0%
2qgsB01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.53 40.0 3.53e-01 80.6% 62.5%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.53 37.0 3.47e-01 74.2% 69.7%
4annA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 42.0 3.21e-01 96.8% 65.3%
1bgcA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 45.0 3.42e-01 100.0% 100.0%
1mn8D00 1.10.150.180 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Gamma-retroviral matrix domain 0.51 41.0 3.68e-01 95.2% 69.1%
2vkjA00 1.20.58.2030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 36.0 3.11e-01 75.8% 43.4%
4djgB00 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.51 36.0 4.00e-01 96.8% 97.9%
4f0cA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 39.0 3.16e-01 90.3% 59.4%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3703925 101.1.1.67 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.73 55.0 5.29e-01 96.8% 71.4%
3354221 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 51.0 5.05e-01 96.8% 75.4%
3312765 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 50.0 4.96e-01 98.4% 75.4%
4371208 198.1.1.1 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.67 56.0 5.29e-01 96.8% 98.7%
3499876 574.1.1.0 ↗ alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) 0.67 54.0 5.15e-01 95.2% 76.0%
3807459 101.1.1.222 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Hrp3 0.65 50.0 5.03e-01 98.4% 81.2%
4268846 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.65 52.0 4.53e-01 91.9% 82.0%
5026209 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 47.0 4.83e-01 95.2% 83.3%
3262554 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.64 54.0 5.12e-01 98.4% 100.0%
4355046 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.64 52.0 4.57e-01 91.9% 62.1%
4932401 3930.1.1.3 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.63 44.0 3.50e-01 74.2% 97.7%
3977558 639.2.1.3 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › BDM 0.62 47.0 4.93e-01 82.3% 100.0%
5053142 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 50.0 4.08e-01 98.4% 47.5%
3277793 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 40.0 4.18e-01 85.5% 76.4%
4306436 610.1.1.1 ↗ alpha arrays › ERP29 C domain-like › ERP29 C domain-like › ERP29 C domain-like › ERp29 0.59 49.0 4.17e-01 95.2% 86.1%
3613957 102.1.1.32 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_9 0.59 47.0 4.53e-01 95.2% 81.3%
3286911 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 49.0 4.77e-01 95.2% 87.1%
4049391 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.58 48.0 4.24e-01 95.2% 70.5%
5051863 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 49.0 3.03e-01 100.0% 34.6%
3263101 3930.1.1.0 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.57 41.0 3.39e-01 80.6% 82.3%
3801933 3930.1.1.0 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.57 44.0 3.66e-01 90.3% 79.2%
3866856 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.56 45.0 3.00e-01 95.2% 20.3%
3761203 529.1.1.0 ↗ few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) 0.56 45.0 3.91e-01 95.2% 56.2%
5034461 3930.1.1.3 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.56 44.0 3.65e-01 91.9% 89.6%
4009705 639.2.1.0 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.55 45.0 4.56e-01 91.9% 100.0%
4930280 3930.1.1.3 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.54 42.0 3.50e-01 90.3% 88.8%
5055736 3930.1.1.3 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.54 42.0 3.45e-01 90.3% 84.8%
3806009 5044.1.1.9 ↗ extended segments › PsbZ-like › PsbZ-like › PsbZ-like › PF30904 0.51 35.0 3.42e-01 72.6% 98.6%
3576680 109.4.1.1312 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30475 0.51 39.0 2.74e-01 87.1% 30.4%
3456188 109.7.1.10 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › WAV3_C 0.51 40.0 3.83e-01 90.3% 72.0%
4095698 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.50 36.0 2.97e-01 75.8% 82.6%
3470186 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.50 35.0 3.16e-01 74.2% 56.7%
D2 high residues 76-167
PDB