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KU836751.1__AMR60110.1__LEO2_72__00072

Bact-Vir

KU836751.1__AMR60110.1__LEO2_72__00072

Identity

Accession:
KU836751 ↗
Kingdom:
phage

Quality

83.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-42
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bb8A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.90 46.0 3.08e-01 85.0% 15.2%
3facA00 2.170.150.70 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › 0.71 45.0 3.32e-01 70.0% 23.9%
2kxqA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.70 45.0 4.88e-01 72.5% 86.7%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.69 56.0 4.33e-01 97.5% 44.9%
6u26A01 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.68 49.0 3.76e-01 77.5% 43.2%
2x3lA01 3.90.1150.150 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.67 55.0 4.13e-01 100.0% 36.2%
3lppA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.67 55.0 3.42e-01 95.0% 38.4%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.66 49.0 4.38e-01 100.0% 54.0%
3k1rA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.66 49.0 3.58e-01 82.5% 75.7%
2dsyD00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 48.0 3.82e-01 90.0% 39.5%
3pubA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.65 53.0 3.62e-01 100.0% 78.3%
3cngA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.63 42.0 4.41e-01 70.0% 94.1%
1t6eX02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.61 47.0 3.11e-01 100.0% 18.6%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.61 52.0 3.87e-01 100.0% 47.3%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 3.04e-01 100.0% 22.5%
3vlaA02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.60 52.0 3.31e-01 100.0% 34.1%
6gpkA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.60 46.0 3.64e-01 100.0% 40.4%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 41.0 3.50e-01 72.5% 38.4%
5w5yB08 3.90.1800.10 Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain 0.59 40.0 2.83e-01 72.5% 43.8%
3ihpA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 49.0 3.63e-01 100.0% 61.2%
6ywnA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 46.0 3.57e-01 97.5% 97.2%
3upsA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 51.0 3.77e-01 100.0% 82.4%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.58 43.0 3.93e-01 92.5% 58.6%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.58 46.0 3.91e-01 100.0% 50.0%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.58 51.0 4.06e-01 100.0% 77.5%
2pokA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.58 52.0 3.10e-01 100.0% 37.8%
2ehzA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 42.0 3.14e-01 90.0% 26.7%
3kt7A01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.58 49.0 3.08e-01 100.0% 78.5%
4ii2A04 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 49.0 3.08e-01 95.0% 31.9%
2jx8A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.56 41.0 3.97e-01 80.0% 68.1%
4wh5A00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.56 47.0 3.25e-01 100.0% 57.0%
6d0aA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 49.0 3.56e-01 100.0% 63.5%
4i8qA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 47.0 2.83e-01 97.5% 17.5%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.56 42.0 2.51e-01 87.5% 70.5%
4alzA01 3.30.1340.30 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 0.55 44.0 3.99e-01 97.5% 93.5%
5ly3A02 3.30.420.570 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.55 48.0 3.03e-01 100.0% 34.4%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.54e-01 100.0% 50.8%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.40e-01 100.0% 40.0%
6iw6A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 46.0 3.47e-01 100.0% 50.0%
6t8qA00 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.54 47.0 2.71e-01 100.0% 41.8%
6iw6B01 1.10.1410.10 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.54 38.0 2.52e-01 97.5% 15.6%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 35.0 3.16e-01 72.5% 41.9%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 3.48e-01 100.0% 46.3%
1loxA01 1.20.245.10 Mainly Alpha › Up-down Bundle › Lipoxygenase-1; domain 5 › Lipoxygenase-1; Domain 5 0.53 47.0 2.71e-01 100.0% 38.3%
2fgeA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 37.0 2.34e-01 80.0% 86.1%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 2.75e-01 97.5% 69.4%
4qfkA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 40.0 3.02e-01 92.5% 58.3%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.51 39.0 2.44e-01 95.0% 44.1%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.47e-01 100.0% 53.8%
4j4hA01 3.40.50.12150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 39.0 2.92e-01 100.0% 43.7%
3mc6A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 44.0 3.09e-01 100.0% 64.9%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4174957 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.85 42.0 2.56e-01 87.5% 10.3%
4972588 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.75 63.0 3.70e-01 97.5% 12.6%
3888040 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.75 65.0 5.41e-01 100.0% 74.3%
3189772 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.74 47.0 5.19e-01 70.0% 86.7%
3755591 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.73 58.0 5.12e-01 97.5% 58.5%
3845218 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.73 50.0 4.26e-01 72.5% 44.6%
4946684 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.71 58.0 3.43e-01 97.5% 11.7%
4639725 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.71 47.0 2.71e-01 70.0% 22.2%
3620234 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.70 48.0 3.19e-01 80.0% 18.1%
3665481 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.69 47.0 4.65e-01 82.5% 66.7%
3299616 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.69 47.0 4.71e-01 77.5% 72.5%
4211411 386.1.1.231 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF2709 0.69 47.0 3.54e-01 72.5% 34.4%
3910066 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 56.0 4.59e-01 97.5% 62.5%
3709555 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.68 48.0 4.42e-01 80.0% 56.4%
3759995 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 56.0 3.43e-01 100.0% 18.7%
3844867 64.1.1.7 beta meanders › WW domain-like › WW domain › WW domain › WW_USP8 0.67 46.0 4.80e-01 75.0% 82.9%
3489460 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.67 44.0 4.56e-01 72.5% 77.1%
3472289 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.67 44.0 4.56e-01 70.0% 77.1%
3403173 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.67 45.0 4.70e-01 80.0% 82.9%
3388135 4292.2.1.1 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › FlaG 0.67 54.0 4.49e-01 95.0% 54.7%
4945596 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.66 43.0 4.24e-01 77.5% 60.0%
3705154 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.65 44.0 4.47e-01 80.0% 72.5%
4946710 876.1.1.0 a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.64 48.0 3.95e-01 82.5% 45.3%
5071300 601.27.1.0 alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like 0.64 44.0 2.84e-01 100.0% 16.1%
4179803 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.64 51.0 3.23e-01 87.5% 30.5%
3742497 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.64 52.0 3.82e-01 100.0% 32.2%
4022266 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.64 43.0 2.80e-01 72.5% 15.0%
4928574 241.11.1.0 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.64 51.0 4.09e-01 97.5% 43.2%
3988268 2004.1.1.44 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PRK 0.63 43.0 2.80e-01 72.5% 92.7%
4032285 316.1.1.11 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB 0.63 51.0 3.47e-01 97.5% 26.1%
3190898 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.63 46.0 4.69e-01 90.0% 80.0%
4013690 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.63 41.0 3.76e-01 72.5% 49.1%
3438045 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.62 52.0 4.44e-01 95.0% 93.8%
3637475 101.1.1.247 alpha arrays › HTH › HTH › Three-helical HTH › zf-H2C2 0.62 49.0 3.57e-01 90.0% 38.3%
1177674 158.1.1.1 alpha bundles › Lipoxygenase › Lipoxygenase › Lipoxygenase › Lipoxygenase 0.62 48.0 2.67e-01 85.0% 74.8%
4954535 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.62 52.0 4.04e-01 100.0% 78.9%
3365178 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 49.0 4.24e-01 95.0% 87.7%
4202852 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.59 51.0 3.77e-01 97.5% 87.6%
3328891 4.1.1.296 beta barrels › SH3 › SH3 › SH3 › TDBD 0.58 41.0 3.65e-01 77.5% 60.0%
165942 101.1.2.63 alpha arrays › HTH › HTH › winged helix domain › FaeA 0.58 44.0 3.71e-01 100.0% 48.6%
3894482 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.58 46.0 2.92e-01 100.0% 15.6%
3616382 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 51.0 4.42e-01 97.5% 65.0%
3928448 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.58 45.0 4.36e-01 90.0% 77.8%
3349477 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 40.0 2.68e-01 75.0% 26.1%
3557648 6148.1.1.1 few secondary structure elements › N-terminal domain of EpCAM › N-terminal domain of EpCAM › N-terminal domain of EpCAM › EpCAM_N 0.57 43.0 4.39e-01 97.5% 85.0%
3308072 375.1.1.53 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Nudix_N_2 0.57 42.0 4.25e-01 80.0% 85.0%
4986806 375.1.4.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 0.57 38.0 3.87e-01 72.5% 67.5%
4994452 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.57 45.0 3.61e-01 95.0% 46.3%
3272035 109.21.1.2 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nup96 0.56 50.0 2.73e-01 100.0% 51.0%
3352485 2007.5.1.17 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase 0.56 47.0 2.91e-01 95.0% 29.8%
3912169 5.1.3.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF 0.56 46.0 2.80e-01 100.0% 16.4%
3176989 601.19.1.40 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PF28954 0.55 47.0 3.11e-01 95.0% 71.9%
3352340 375.1.1.210 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF30904 0.55 37.0 3.49e-01 75.0% 50.9%
4003837 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.55 45.0 3.29e-01 95.0% 35.0%
3943200 159.1.4.3 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Type II deoxyuridine triphosphatase-related › PRA-PH 0.55 49.0 2.94e-01 100.0% 35.4%
4027092 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.55 45.0 3.39e-01 100.0% 39.1%
4965059 101.1.2.911 alpha arrays › HTH › HTH › winged helix domain › DUF5827 0.54 42.0 3.52e-01 100.0% 48.0%
3359496 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.54 44.0 2.76e-01 100.0% 96.3%
3493671 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.54 43.0 2.72e-01 97.5% 19.6%
3319016 2007.5.1.17 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase 0.53 44.0 2.79e-01 100.0% 16.5%
3186255 223.1.1.21 a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.52 46.0 2.71e-01 100.0% 14.7%