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KU848187.1ANJ65472.1PLE2_14__00013

Bact-Vir

KU848187.1__ANJ65472.1__PLE2_14__00013

Identity

Accession:: KU848187 ↗
Kingdom:: phage

Quality

81.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pleeduovirus› Lactobacillus_phage_PLE2

TaxID: 1815511

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-112

PDB

Domain cluster: representative

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3h5tA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.62	31.0	4.05e-01	78.2%	100.0%
3d8lA00	1.10.8.940	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12	0.59	46.0	4.82e-01	84.2%	95.6%
1uxdA00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.57	31.0	3.71e-01	82.2%	86.4%
2ah5A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.57	31.0	3.83e-01	99.0%	84.6%
6yigA01	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.54	33.0	3.50e-01	72.3%	68.2%
1c9bA01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.54	34.0	3.53e-01	78.2%	66.0%
1aisB02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.54	35.0	3.60e-01	80.2%	69.1%
3hgkE00	1.20.1280.110	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.53	36.0	3.89e-01	99.0%	92.2%
7wu8B01	1.20.1160.20	Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) ›	0.52	33.0	3.62e-01	82.2%	79.7%
3am6A00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.52	40.0	3.20e-01	84.2%	79.9%
4doyA03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.52	41.0	3.42e-01	85.1%	91.3%
1wzoA01	2.30.30.370	Mainly Beta › Roll › SH3 type barrels. › FAH	0.52	23.0	3.26e-01	95.0%	95.0%
4uobA01	1.10.1670.10	Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal)	0.52	34.0	3.35e-01	98.0%	58.6%
2hfiA00	1.20.120.440	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like	0.51	35.0	3.31e-01	70.3%	91.9%
2wjwA01	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.51	36.0	2.88e-01	73.3%	78.0%
7qv0F01	1.10.1200.10	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like	0.51	35.0	3.83e-01	85.1%	91.4%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3965726	6050.1.1.0 ↗	a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone	0.77	61.0	6.61e-01	99.0%	100.0%
5051582	101.1.4.0 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like	0.60	35.0	4.10e-01	78.2%	87.7%
4965872	101.1.10.3 ↗	alpha arrays › HTH › HTH › Cyclin-like › TFIIB	0.58	36.0	3.65e-01	79.2%	62.0%
3584092	226.1.1.0 ↗	a+b two layers › POZ domain › POZ domain › POZ domain	0.58	35.0	3.46e-01	78.2%	56.2%
3450254	101.1.10.37 ↗	alpha arrays › HTH › HTH › Cyclin-like › PF26138	0.56	42.0	4.11e-01	85.1%	73.6%
None	—		0.55	44.0	3.39e-01	85.1%	83.1%
5063615	101.22.1.0 ↗	alpha arrays › HTH › IscX-like (DEPRECATED) › IscX-like (DEPRECATED)	0.55	36.0	4.05e-01	94.1%	90.7%
4947863	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.55	35.0	3.67e-01	80.2%	71.1%
4944102	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.55	35.0	3.66e-01	80.2%	71.1%
3227203	101.1.10.3 ↗	alpha arrays › HTH › HTH › Cyclin-like › TFIIB	0.54	34.0	3.04e-01	79.2%	42.7%
3744474	109.54.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12	0.54	29.0	2.98e-01	93.1%	52.0%
3460321	101.1.1.267 ↗	alpha arrays › HTH › HTH › Three-helical HTH › PF26138	0.52	33.0	2.88e-01	85.1%	40.0%
3656429	101.1.1.267 ↗	alpha arrays › HTH › HTH › Three-helical HTH › PF26138	0.51	38.0	3.08e-01	79.2%	44.4%
4934796	6049.1.1.0 ↗	alpha bundles › PH0832-like › PH0832-like › PH0832-like	0.51	41.0	4.29e-01	96.0%	100.0%
5057545	3352.1.1.2 ↗	alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2	0.51	35.0	2.51e-01	73.3%	37.5%

D2 medium residues 136-185

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7cyuA01	1.10.30.10	Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain	0.68	45.0	4.37e-01	70.0%	94.7%
3fnrA02	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.59	49.0	3.10e-01	98.0%	45.7%
5eghB01	3.40.720.10	Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A	0.58	48.0	3.02e-01	94.0%	72.0%
2keyA00	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.57	43.0	3.33e-01	82.0%	38.4%
2p5vA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	37.0	3.69e-01	72.0%	86.5%
2ia0A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	36.0	3.56e-01	72.0%	66.7%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3794323	130.1.1.0 ↗	alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif	0.76	58.0	6.05e-01	88.0%	93.3%