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KU862660.1__ANA49238.1__PMW_113__00113

Bact-Vir

KU862660.1__ANA49238.1__PMW_113__00113

Identity

Accession:
KU862660 ↗
Kingdom:
phage

Quality

72.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Plaisancevirus› Pseudomonas_phage_phiPMW

TaxID: 1815582

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-67
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vw3B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 46.0 3.87e-01 94.3% 44.1%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.63 53.0 5.24e-01 96.2% 100.0%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 53.0 4.54e-01 100.0% 66.3%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.61 49.0 4.88e-01 94.3% 100.0%
5jh8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 51.0 4.77e-01 98.1% 82.1%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.59 47.0 3.61e-01 100.0% 72.6%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 45.0 4.24e-01 98.1% 100.0%
3qokA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 45.0 3.88e-01 100.0% 97.9%
2ky6A00 2.40.290.30 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › Mediator complex subunit 25, ACID domain 0.54 47.0 3.37e-01 100.0% 41.0%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.53 43.0 3.69e-01 100.0% 73.7%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.35e-01 100.0% 82.0%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 44.0 4.01e-01 100.0% 77.3%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 40.0 3.26e-01 92.5% 66.9%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.36e-01 100.0% 53.0%
3dmeA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.51 38.0 2.82e-01 100.0% 28.8%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 33.0 3.56e-01 100.0% 87.2%
2e2dC02 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 37.0 3.22e-01 84.9% 56.4%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 42.0 3.35e-01 100.0% 43.8%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.50 34.0 3.32e-01 100.0% 62.9%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 41.0 3.41e-01 98.1% 79.6%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3575679 12.3.1.42 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 0.63 44.0 3.08e-01 75.5% 71.3%
3190226 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 46.0 3.66e-01 98.1% 37.0%
1806486 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.61 52.0 5.14e-01 98.1% 98.2%
3861601 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.60 48.0 3.61e-01 100.0% 74.2%
1839421 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.60 51.0 3.20e-01 100.0% 17.7%
4115593 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.60 50.0 3.17e-01 100.0% 18.5%
5077064 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.59 50.0 3.13e-01 98.1% 26.9%
3739064 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.63e-01 100.0% 86.2%
4029963 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.56 44.0 3.55e-01 96.2% 41.7%
4016933 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.56 44.0 3.75e-01 94.3% 50.5%
4172303 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.54 41.0 3.22e-01 94.3% 36.0%
3983134 223.1.1.113 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 0.54 46.0 3.85e-01 100.0% 73.0%
3579987 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.54 42.0 3.40e-01 100.0% 42.7%
3214234 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 40.0 3.86e-01 100.0% 71.7%
4008034 223.1.1.113 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 0.54 46.0 3.32e-01 100.0% 42.9%
3397132 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 40.0 4.07e-01 100.0% 87.3%
4971897 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 44.0 3.78e-01 100.0% 92.6%
3996686 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.53 45.0 3.36e-01 100.0% 39.3%
3476015 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.53 41.0 3.52e-01 100.0% 49.5%
4202852 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.53 38.0 3.20e-01 92.5% 41.0%
134040 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.53 43.0 3.69e-01 100.0% 73.7%
3606204 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 44.0 3.41e-01 100.0% 60.7%
3584249 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.53 45.0 3.64e-01 100.0% 69.1%
3925367 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.19e-01 94.3% 44.0%
1644767 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 38.0 3.33e-01 100.0% 50.6%
3627817 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.51 43.0 2.77e-01 100.0% 19.3%
4932673 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.51 37.0 3.28e-01 92.5% 48.9%
3579823 331.18.1.5 ↗ a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › PTHB1_pf 0.51 44.0 3.62e-01 100.0% 60.0%
3968301 244.1.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.51 42.0 3.58e-01 100.0% 91.0%
4317800 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 42.0 3.21e-01 98.1% 70.0%
3389668 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.51 44.0 3.64e-01 100.0% 54.0%
4034031 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.51 42.0 4.02e-01 100.0% 78.5%
3956757 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 42.0 3.56e-01 98.1% 84.2%
4217727 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 41.0 3.27e-01 100.0% 56.2%
3210606 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.50 42.0 3.32e-01 100.0% 73.6%
3626364 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.50 44.0 3.45e-01 100.0% 72.2%
943 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.50 42.0 3.54e-01 100.0% 53.0%