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KU862660.1__ANA49304.1__PMW_179__00179

Bact-Vir

KU862660.1__ANA49304.1__PMW_179__00179

Identity

Accession:
KU862660 ↗
Kingdom:
phage

Quality

76.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Plaisancevirus› Pseudomonas_phage_phiPMW

TaxID: 1815582

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-59
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.63 44.0 4.81e-01 74.6% 97.8%
3plnA03 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 44.0 3.25e-01 76.3% 87.0%
3hx4A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 41.0 2.91e-01 83.1% 56.6%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 43.0 3.87e-01 88.1% 69.0%
1ck7A01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.54 41.0 2.84e-01 88.1% 47.7%
8e9gK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 37.0 3.24e-01 74.6% 86.8%
3ufeA02 1.20.58.1950 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 40.0 4.14e-01 93.2% 96.2%
1uaaA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 38.0 3.58e-01 84.7% 63.5%
4c2dA02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.50 38.0 3.47e-01 84.7% 87.1%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4947232 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.72 49.0 4.40e-01 72.9% 51.2%
None — 0.63 49.0 4.08e-01 86.4% 59.3%
D2 medium residues 60-176
PDB
Domain cluster: rep: MF893340.1__ATN92885.1__PPSC2_122__00122__D35-135
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qhlA00 3.40.1140.10 Alpha Beta › 3-Layer(aba) Sandwich › N-terminal domain of mukB › 0.65 48.0 4.03e-01 77.8% 94.1%
3qktD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 46.0 3.44e-01 84.6% 73.0%
2i99A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.59 43.0 4.05e-01 77.8% 71.3%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 42.0 3.98e-01 76.9% 77.6%
3kg7B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.58 40.0 3.04e-01 71.8% 66.3%
1f2uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 43.0 4.02e-01 79.5% 98.7%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.57 42.0 3.48e-01 78.6% 60.8%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 43.0 3.23e-01 80.3% 87.5%
1yq2A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 40.0 2.97e-01 74.4% 59.7%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.56 41.0 3.83e-01 77.8% 67.1%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.56 42.0 3.38e-01 80.3% 56.7%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.56 38.0 3.88e-01 70.1% 76.5%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 39.0 3.67e-01 74.4% 77.0%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.55 40.0 3.83e-01 77.8% 67.9%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.53 38.0 3.30e-01 75.2% 74.2%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 38.0 2.66e-01 75.2% 90.7%
4eg9A00 2.50.20.40 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.52 39.0 3.10e-01 78.6% 64.1%
2rkcA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 39.0 2.78e-01 82.9% 78.7%
1zhxA03 2.40.160.120 Mainly Beta › Beta Barrel › Porin › 0.51 40.0 3.43e-01 84.6% 62.3%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 36.0 2.78e-01 75.2% 91.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4980165 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.69 54.0 3.62e-01 82.9% 89.2%
3707067 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.68 47.0 3.72e-01 70.1% 40.0%
3174442 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 43.0 3.34e-01 70.9% 68.5%
5081617 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 49.0 3.49e-01 85.5% 77.2%
3363098 295.1.1.5 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Whirly 0.59 45.0 4.78e-01 80.3% 100.0%
3816749 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 46.0 3.38e-01 82.9% 60.9%
4932706 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.58 45.0 2.96e-01 84.6% 87.3%
3181792 331.3.1.6 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.57 52.0 4.30e-01 96.6% 85.5%
3283330 331.3.1.20 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C 0.57 42.0 3.32e-01 77.8% 55.7%
4958640 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.56 43.0 3.77e-01 80.3% 62.6%
3866573 12.3.1.42 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 0.56 42.0 3.16e-01 79.5% 76.3%
3961758 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.52 39.0 3.63e-01 79.5% 80.0%
4882253 5.1.4.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin_propel 0.52 37.0 2.71e-01 73.5% 64.2%
3568625 883.1.1.6 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1_N 0.50 40.0 3.79e-01 86.3% 82.8%