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KU873925.1__AND74959.1__pf16_36__00035

Bact-Vir

KU873925.1__AND74959.1__pf16_36__00035

Identity

Accession:
KU873925 ↗
Kingdom:
phage

Quality

72.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chakrabartyvirus› Pseudomonas_phage_pf16

TaxID: 1815630

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-90
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.70 48.0 4.95e-01 70.1% 91.5%
3ihpA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 51.0 4.72e-01 97.7% 64.7%
1xkpB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 37.0 3.36e-01 100.0% 45.5%
4f4oC03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 42.0 4.19e-01 74.7% 88.8%
6oziB00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.57 49.0 3.69e-01 100.0% 80.1%
6dxwA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.57 49.0 3.69e-01 98.9% 71.6%
6qm7M00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 48.0 3.71e-01 98.9% 74.3%
2otnB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.56 48.0 4.13e-01 98.9% 59.6%
1itcA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 44.0 2.95e-01 93.1% 84.1%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 46.0 4.59e-01 94.3% 93.5%
1rypL00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 47.0 3.62e-01 98.9% 71.2%
1zq1A02 3.40.50.1170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › L-asparaginase, N-terminal domain 0.54 42.0 3.22e-01 86.2% 81.5%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.54 26.0 3.56e-01 87.4% 100.0%
3fmaA00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.53 36.0 3.70e-01 75.9% 75.3%
2mctA00 2.60.40.4250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.50e-01 75.9% 75.5%
3vkgA03 3.20.180.20 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › Dynein motor heavy chain, linker domain, subdomain 3 0.51 31.0 3.03e-01 98.9% 53.0%
2bs2A02 3.90.700.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C3; Chain A, domain 1 › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 0.51 43.0 4.03e-01 95.4% 79.4%
1wd5A02 3.30.1310.20 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › PRTase-like 0.50 31.0 3.59e-01 97.7% 88.5%
1s3iA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.50 32.0 3.10e-01 88.5% 54.9%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5015372 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.74 31.0 3.64e-01 74.7% 53.8%
3425722 386.1.1.117 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.61 30.0 3.03e-01 96.6% 47.1%
5049438 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 38.0 3.26e-01 70.1% 41.4%
3227008 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.56 44.0 2.96e-01 83.9% 79.7%
3238987 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.56 43.0 2.96e-01 83.9% 79.7%
1273580 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.56 48.0 4.18e-01 98.9% 62.1%
4984512 2002.1.1.208 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › BtpA 0.55 46.0 3.31e-01 95.4% 81.4%
3723643 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.55 47.0 3.51e-01 98.9% 62.1%
3201324 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.55 47.0 3.44e-01 98.9% 58.1%
3192849 708.1.2.10 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › HECT_2 0.54 42.0 3.59e-01 85.1% 62.8%
3226885 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.54 47.0 3.23e-01 98.9% 63.1%
3214589 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.54 41.0 2.80e-01 82.8% 78.8%
4863223 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.53 45.0 3.77e-01 98.9% 90.8%
3218566 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.53 41.0 2.84e-01 86.2% 79.9%
4052768 3675.1.1.0 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.53 38.0 3.16e-01 74.7% 100.0%
5024174 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.51 40.0 2.60e-01 87.4% 47.8%