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KU873925.1__AND75000.1__pf16_77__00076

Bact-Vir

KU873925.1__AND75000.1__pf16_77__00076

Identity

Accession:
KU873925 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-75_157-177
PDB
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6czfA01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.83 76.0 5.17e-01 99.0% 69.8%
1ao0A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.81 74.0 5.12e-01 99.0% 68.3%
6l9iA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 45.0 3.61e-01 77.1% 70.0%
4nzfD02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 40.0 4.18e-01 71.9% 77.8%
4nohA01 3.30.70.3060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 38.0 4.31e-01 90.6% 91.5%
1j3qB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 40.0 3.34e-01 78.1% 60.1%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 4.62e-01 87.5% 96.5%
6hyfA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 4.29e-01 87.5% 83.0%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 39.0 3.54e-01 75.0% 71.8%
2e0nB02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.54 37.0 3.60e-01 75.0% 61.6%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 37.0 3.42e-01 71.9% 77.2%
1fyhB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 4.26e-01 87.5% 94.2%
1aw8B00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.53 42.0 4.32e-01 85.4% 97.8%
4n2kA01 2.60.40.1860 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, N-terminal domain 0.53 41.0 3.88e-01 85.4% 86.6%
6grqA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 4.23e-01 88.5% 93.9%
2jqzA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 41.0 3.76e-01 86.5% 92.4%
4ecnA02 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.52 40.0 3.70e-01 82.3% 92.6%
5z0uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.85e-01 88.5% 88.7%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.96e-01 87.5% 92.3%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.88e-01 86.5% 84.0%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994995 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.85 79.0 5.78e-01 99.0% 90.2%
None 0.85 79.0 5.79e-01 100.0% 89.8%
5048308 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.84 78.0 5.81e-01 100.0% 89.3%
4940798 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.84 78.0 5.66e-01 100.0% 85.3%
4928832 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.84 78.0 5.79e-01 100.0% 90.2%
None 0.83 77.0 5.61e-01 100.0% 86.7%
5014594 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.83 77.0 5.83e-01 100.0% 90.5%
5038391 210.1.3.0 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.78 72.0 5.50e-01 100.0% 90.0%
5016339 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.77 72.0 5.31e-01 100.0% 90.4%
5065071 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.76 71.0 5.38e-01 100.0% 90.5%
3428857 2002.1.1.219 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Raffinose_syn 0.62 43.0 3.96e-01 70.8% 80.0%
4425437 10.1.1.2 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.62 46.0 3.33e-01 78.1% 90.2%
3365600 12.1.1.63 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Raffinose_syn 0.60 42.0 3.78e-01 72.9% 79.3%
1412508 12.1.1.35 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_C 0.58 40.0 4.13e-01 71.9% 76.9%
3268021 12.1.1.35 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_C 0.57 39.0 3.99e-01 70.8% 75.8%
3389361 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 39.0 3.93e-01 70.8% 98.9%
1936911 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.56 39.0 3.76e-01 76.0% 61.6%
4664342 12.1.1.35 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_C 0.56 42.0 4.21e-01 92.7% 77.0%
5058198 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.56 43.0 3.92e-01 89.6% 62.4%
5055294 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.55 41.0 4.39e-01 91.7% 89.4%
5022263 322.1.1.2 a+b two layers › HPr-like › HPr-like › HPr-like › 3H 0.55 49.0 4.74e-01 100.0% 95.5%
3212161 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.55 44.0 4.24e-01 87.5% 88.2%
4598953 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 40.0 3.91e-01 78.1% 79.0%
4345353 322.1.1.2 a+b two layers › HPr-like › HPr-like › HPr-like › 3H 0.54 48.0 4.45e-01 100.0% 89.2%
3650101 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.53 45.0 2.81e-01 91.7% 33.6%
3489254 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.53 45.0 3.60e-01 92.7% 63.8%
3622948 11.2.1.52 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem 0.53 41.0 3.60e-01 85.4% 89.3%
3927698 11.1.1.905 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ILCR1 0.52 43.0 3.69e-01 89.6% 71.0%
3275234 11.1.4.127 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7035 0.52 43.0 4.20e-01 92.7% 96.4%
4461658 304.3.1.16 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › PrmA 0.51 41.0 4.07e-01 100.0% 81.9%
3934346 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.90e-01 87.5% 91.8%
3447505 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.51 42.0 3.21e-01 91.7% 54.0%
2625944 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.51 41.0 3.42e-01 89.6% 50.9%
4362393 12.1.1.50 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd 0.50 34.0 3.51e-01 71.9% 84.2%
D2 medium residues 76-156
PDB
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ct9A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.82 76.0 5.61e-01 100.0% 42.7%
7ylzA01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.81 75.0 5.38e-01 100.0% 39.0%
1ao0A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.80 72.0 4.84e-01 100.0% 30.7%
3pu9A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.60 53.0 3.78e-01 97.5% 48.1%
6muwK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.58 53.0 3.96e-01 100.0% 49.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 32.0 3.54e-01 96.3% 66.7%
2irmA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.58 50.0 3.35e-01 100.0% 64.9%
1q5qH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 50.0 3.65e-01 100.0% 47.3%
3g9kF01 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.56 49.0 3.97e-01 100.0% 66.3%
5hftD00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.56 50.0 4.07e-01 100.0% 52.6%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.56 33.0 2.62e-01 96.3% 27.7%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 49.0 3.70e-01 100.0% 47.2%
4jndA02 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 47.0 3.32e-01 100.0% 37.1%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 30.0 3.32e-01 98.8% 67.7%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.53 27.0 3.07e-01 87.7% 64.9%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 30.0 3.28e-01 98.8% 71.0%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937741 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.86 73.0 5.52e-01 100.0% 41.7%
4928832 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.86 80.0 5.63e-01 100.0% 41.3%
4680317 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.84 78.0 5.47e-01 100.0% 38.7%
5051945 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.84 78.0 5.58e-01 100.0% 38.6%
None 0.84 78.0 5.44e-01 100.0% 38.3%
None 0.84 78.0 5.39e-01 100.0% 37.9%
5055717 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.83 78.0 5.42e-01 100.0% 35.3%
3951046 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.83 78.0 5.26e-01 100.0% 33.2%
3960590 210.1.3.0 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.83 77.0 5.64e-01 100.0% 44.0%
3287103 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.83 77.0 5.42e-01 100.0% 36.1%
3963821 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.83 77.0 5.31e-01 100.0% 36.4%
4947903 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.83 77.0 5.31e-01 100.0% 37.1%
3392899 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.83 77.0 5.57e-01 100.0% 40.5%
3284789 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.82 76.0 5.39e-01 100.0% 37.8%
None 0.82 77.0 5.58e-01 100.0% 44.5%
4224238 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.82 76.0 5.35e-01 100.0% 35.2%
None 0.82 75.0 5.35e-01 100.0% 37.3%
4140246 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.81 76.0 5.22e-01 100.0% 33.9%
3263898 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.81 75.0 5.21e-01 100.0% 34.8%
4646896 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.81 75.0 5.10e-01 100.0% 30.9%
3774325 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.81 74.0 5.30e-01 100.0% 37.3%
4000151 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.80 74.0 5.41e-01 100.0% 40.5%
5018425 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.80 74.0 5.47e-01 100.0% 43.7%
4990807 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.79 74.0 5.46e-01 100.0% 43.7%
3992414 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.78 72.0 5.28e-01 100.0% 40.5%
3404950 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.78 67.0 4.79e-01 100.0% 33.8%
3189996 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.72 65.0 4.57e-01 100.0% 35.9%
3483778 210.1.3.0 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.72 64.0 4.49e-01 100.0% 32.3%
3786289 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.70 62.0 4.54e-01 100.0% 36.7%
3440200 210.1.3.0 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.70 63.0 4.93e-01 100.0% 55.6%
3744535 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.70 63.0 4.66e-01 100.0% 40.0%
3622750 210.1.3.0 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.69 62.0 4.76e-01 100.0% 45.0%
4945860 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.57 50.0 4.14e-01 98.8% 86.7%
4998349 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.56 50.0 3.72e-01 100.0% 46.6%
3967418 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.55 48.0 2.95e-01 100.0% 21.2%
4364336 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.51 32.0 3.76e-01 98.8% 92.7%
5004672 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.51 37.0 3.35e-01 79.0% 94.2%