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KU873925.1__AND75123.1__pf16_200__00199

Bact-Vir

KU873925.1__AND75123.1__pf16_200__00199

Identity

Accession:
KU873925 ↗
Kingdom:
phage

Quality

90.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chakrabartyvirus› Pseudomonas_phage_pf16

TaxID: 1815630

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-49_121-140
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ppbA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 51.0 3.77e-01 91.9% 55.3%
4i43B02 3.30.43.40 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain 0.59 44.0 3.62e-01 80.6% 50.9%
1a31A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.58 48.0 4.54e-01 96.8% 76.2%
1l3lA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.58 50.0 3.72e-01 100.0% 98.8%
2ibdA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 47.0 3.63e-01 93.5% 66.0%
4gouA01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.57 42.0 3.28e-01 82.3% 42.6%
3bf7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 48.0 3.29e-01 100.0% 85.1%
3tixA02 6.10.140.1690 Special › Helix non-globular › Helix Hairpins › 0.56 41.0 3.84e-01 79.0% 94.9%
1n00A01 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.56 45.0 4.18e-01 93.5% 84.5%
4mduA02 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.55 44.0 4.13e-01 95.2% 97.6%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3520085 189.1.1.2 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.66 57.0 3.91e-01 100.0% 49.8%
3568882 109.4.1.595 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG7 0.63 54.0 3.10e-01 100.0% 18.1%
3246418 109.54.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.62 54.0 4.33e-01 100.0% 84.0%
None — 0.58 49.0 3.32e-01 100.0% 85.1%
None — 0.57 49.0 3.30e-01 100.0% 85.4%
3605868 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.57 44.0 3.69e-01 85.5% 71.8%
4945502 3896.1.1.0 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.56 45.0 3.16e-01 93.5% 49.5%
D2 medium residues 50-120
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bgdA08 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 48.0 3.55e-01 95.8% 97.5%
1ed1A00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.55 44.0 3.81e-01 88.7% 76.3%
5zw7A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 42.0 3.35e-01 85.9% 74.3%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 4.13e-01 80.3% 90.9%
3noyB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.53 33.0 3.06e-01 74.6% 45.3%
7wkqB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 39.0 2.95e-01 87.3% 36.0%
4qjbB01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.50 35.0 2.80e-01 78.9% 33.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3740386 140.1.1.14 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e 0.62 51.0 3.91e-01 93.0% 79.4%
1834540 284.1.1.5 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › Gcd10p 0.56 43.0 3.54e-01 84.5% 47.5%
3262955 4244.1.1.5 ↗ a/b three-layered sandwiches › EreA/ChaN-like › EreA/ChaN-like › EreA/ChaN-like › TraB_PrgY_gumN 0.53 44.0 3.22e-01 97.2% 94.2%
3259159 284.1.1.5 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › Gcd10p 0.53 44.0 3.58e-01 98.6% 74.8%
5083870 375.1.1.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 0.51 43.0 2.99e-01 94.4% 46.1%
3899987 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.51 36.0 3.42e-01 74.6% 63.5%
3313784 2007.1.19.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin 0.51 38.0 2.74e-01 84.5% 59.2%