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KU873925.1__AND75155.1__pf16_232__00231

Bact-Vir

KU873925.1__AND75155.1__pf16_232__00231

Identity

Accession:
KU873925 ↗
Kingdom:
phage

Quality

84.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chakrabartyvirus› Pseudomonas_phage_pf16

TaxID: 1815630

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 108-169
PDB
Domain cluster: rep: OL944604.1__UKL14847.1__X__00016__D8-58
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04448.18 best DUF551 28.6 3.00e-06 100.0% 86.8%
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 51.0 5.69e-01 87.1% 100.0%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.68 53.0 4.53e-01 85.5% 79.8%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 5.18e-01 96.8% 81.8%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 53.0 4.01e-01 93.5% 96.6%
4b0eD00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.63 50.0 4.34e-01 90.3% 81.0%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.60 47.0 3.65e-01 87.1% 66.7%
1qwoA01 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.60 49.0 3.08e-01 95.2% 36.2%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.59 51.0 4.02e-01 100.0% 60.9%
2awnC02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 42.0 3.89e-01 74.2% 85.9%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 44.0 4.43e-01 82.3% 100.0%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.58 46.0 3.51e-01 88.7% 71.9%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.35e-01 82.3% 93.1%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.70e-01 87.1% 79.1%
3md7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.57 44.0 2.94e-01 87.1% 28.9%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 3.93e-01 83.9% 71.2%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 44.0 4.29e-01 93.5% 78.1%
2wv9A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 47.0 3.54e-01 100.0% 78.5%
4m9fA00 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 46.0 3.33e-01 100.0% 77.0%
2zl7A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.55 45.0 4.10e-01 98.4% 98.9%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 45.0 3.97e-01 100.0% 100.0%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 42.0 2.92e-01 87.1% 88.4%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 43.0 3.70e-01 95.2% 62.3%
7lt2A01 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.54 43.0 2.94e-01 90.3% 65.3%
1tu5A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.32e-01 77.4% 57.4%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.54 40.0 3.64e-01 82.3% 59.8%
2bhvB01 2.40.128.260 Mainly Beta › Beta Barrel › Lipocalin › Type IV secretion system, VirB10/TraB/TrbI 0.53 40.0 3.12e-01 88.7% 92.5%
3kfvA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 40.0 3.50e-01 85.5% 88.0%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 44.0 4.11e-01 100.0% 100.0%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 40.0 4.03e-01 88.7% 95.5%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 42.0 4.02e-01 100.0% 97.5%
2oa9B02 3.30.70.3570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain 0.52 43.0 3.45e-01 95.2% 73.2%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 42.0 3.72e-01 98.4% 97.0%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 36.0 3.01e-01 74.2% 91.5%
7zvsB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 37.0 3.21e-01 77.4% 79.8%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.30e-01 85.5% 82.7%
3dmgA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 35.0 2.49e-01 74.2% 48.5%
2wzoA01 3.30.160.360 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 41.0 3.34e-01 96.8% 81.2%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4001749 206.1.3.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP 0.70 50.0 3.69e-01 75.8% 32.9%
3750640 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.69 52.0 4.37e-01 82.3% 73.6%
3890418 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.69 53.0 4.58e-01 87.1% 81.0%
3307205 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.67 55.0 4.39e-01 90.3% 57.6%
3767975 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.67 50.0 4.23e-01 82.3% 72.7%
4870495 304.169.1.1 ↗ a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WYL 0.64 54.0 4.57e-01 96.8% 66.7%
3614906 4.26.1.8 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 0.64 43.0 4.18e-01 71.0% 98.6%
2866962 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 52.0 4.48e-01 96.8% 65.7%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.63 50.0 4.97e-01 90.3% 95.4%
4949773 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.62 53.0 4.12e-01 100.0% 42.1%
3226827 4.1.1.133 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.62 52.0 4.44e-01 95.2% 63.8%
3588750 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.62 43.0 4.11e-01 74.2% 62.7%
3781209 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.62 51.0 4.45e-01 95.2% 69.0%
4932458 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 51.0 3.25e-01 90.3% 23.1%
3478898 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.87e-01 90.3% 86.2%
3913637 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.62 49.0 4.44e-01 91.9% 72.2%
3882269 220.1.1.25 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.62 47.0 4.05e-01 85.5% 81.9%
3497731 220.1.1.56 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.61 48.0 3.78e-01 87.1% 58.5%
3511551 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 50.0 5.06e-01 93.5% 100.0%
3936726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.95e-01 87.1% 100.0%
5034832 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.74e-01 93.5% 100.0%
3464886 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 49.0 5.00e-01 91.9% 96.7%
3231961 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 46.0 4.11e-01 85.5% 87.4%
3635423 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.60 51.0 3.67e-01 95.2% 65.4%
3805766 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.60 45.0 4.73e-01 85.5% 100.0%
5040518 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.63e-01 80.6% 100.0%
3459603 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.60 48.0 3.76e-01 90.3% 55.1%
3390227 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 3.92e-01 87.1% 74.3%
3774692 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.59 49.0 4.60e-01 100.0% 87.5%
3284258 222.1.1.1 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.59 41.0 3.31e-01 74.2% 82.3%
3900733 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 45.0 4.36e-01 85.5% 84.3%
5045854 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.58 38.0 3.57e-01 74.2% 52.5%
3591998 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.58 44.0 3.79e-01 87.1% 79.1%
3861569 220.1.1.56 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.58 45.0 3.74e-01 87.1% 73.0%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 3.72e-01 87.1% 76.5%
3971559 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.57 40.0 3.26e-01 75.8% 84.0%
4950455 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 37.0 3.65e-01 77.4% 60.0%
3237220 220.1.1.84 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.56 43.0 3.60e-01 85.5% 80.9%
3668360 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.56 47.0 3.82e-01 100.0% 66.7%
3831339 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.56 46.0 3.13e-01 95.2% 56.2%
3441677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 41.0 4.40e-01 82.3% 100.0%
3834563 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 44.0 4.11e-01 90.3% 83.7%
3751478 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.55 43.0 4.08e-01 87.1% 94.7%
3775836 220.1.1.56 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.55 43.0 3.69e-01 90.3% 77.3%
3938274 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.55 38.0 2.78e-01 75.8% 75.1%
None — 0.55 45.0 3.43e-01 98.4% 60.8%
3057477 220.1.1.146 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NDK7_N 0.54 41.0 3.70e-01 85.5% 81.3%
1311889 1.1.5.7 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 44.0 3.09e-01 100.0% 79.2%
3710675 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.53 36.0 3.89e-01 75.8% 93.8%
3520408 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.53 45.0 3.37e-01 100.0% 62.4%
4059807 601.52.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain › FlgK_D1 0.52 42.0 2.71e-01 93.5% 56.2%
3485290 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 45.0 3.05e-01 100.0% 56.6%
3999814 3131.1.1.1 ↗ a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.51 41.0 3.14e-01 96.8% 65.1%
3403314 1.1.5.46 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF1986 0.51 39.0 2.79e-01 87.1% 40.4%
160843 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 38.0 3.14e-01 85.5% 72.4%
3708505 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 37.0 3.03e-01 83.9% 71.9%
5001733 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 35.0 2.80e-01 74.2% 75.2%
3830647 868.1.1.5 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 0.51 39.0 2.83e-01 87.1% 37.9%
D2 medium residues 4-69
PDB
Domain cluster: rep: MZ358387.1__UEN68842.1__Moo19_gp46__00046__D4-60