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KU927493.2__AOP04190.1__118970sal3_00053__00053

Bact-Vir

KU927493.2__AOP04190.1__118970sal3_00053__00053

Identity

Accession:
KU927493 ↗
Kingdom:
phage

Quality

70.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmonella_phage_118970_sal3

TaxID: 1813771

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-50
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13443.13 best HTH_26 24.0 5.00e-05 83.3% 60.3%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 56.0 4.99e-01 77.1% 54.4%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 45.0 4.21e-01 70.8% 58.3%
1akhB00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 42.0 3.63e-01 70.8% 44.9%
2dn0A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 42.0 3.64e-01 70.8% 48.7%
1lfuP00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 41.0 3.50e-01 70.8% 42.7%
7z7vE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.60 43.0 4.05e-01 77.1% 93.3%
8e9gE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.57 42.0 3.87e-01 77.1% 82.5%
1nktA02 3.90.1440.10 Alpha Beta › Alpha-Beta Complex › Pre-protein croslinking domain of SecA › SecA, preprotein cross-linking domain 0.56 42.0 3.11e-01 79.2% 36.9%
3oouA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 37.0 3.65e-01 81.2% 100.0%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3978391 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.82 63.0 5.52e-01 83.3% 55.7%
1185984 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.81 72.0 5.85e-01 100.0% 56.7%
3576912 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.72 49.0 4.91e-01 70.8% 72.9%
3911740 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.71 48.0 4.64e-01 70.8% 63.6%
3873950 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.71 48.0 3.77e-01 70.8% 37.0%
5046018 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 50.0 4.23e-01 75.0% 51.2%
3531199 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.71 48.0 4.33e-01 70.8% 56.9%
3798210 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 48.0 4.78e-01 70.8% 70.0%
3991909 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.70 47.0 4.56e-01 70.8% 69.1%
3637548 101.1.1.67 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.69 47.0 4.49e-01 70.8% 65.5%
3994687 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.67 46.0 4.42e-01 70.8% 61.8%
3392498 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.67 45.0 4.13e-01 70.8% 52.3%
4091947 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.65 44.0 4.02e-01 70.8% 53.8%
3268699 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.58 45.0 3.97e-01 85.4% 84.9%
3962970 7574.1.1.0 ↗ a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) 0.57 47.0 2.74e-01 93.8% 24.6%
D2 high residues 62-132
PDB