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KU935715.1__AND75169.1__ME3_8__00008

Bact-Vir

KU935715.1__AND75169.1__ME3_8__00008

Identity

Accession:
KU935715 ↗
Kingdom:
phage

Quality

93.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Metrivirus› Acinetobacter_phage_vB_AbaM_ME3

TaxID: 1837876

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-57
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.83 71.0 5.87e-01 98.2% 54.6%
3hdeC00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.81 73.0 5.11e-01 98.2% 36.0%
152lA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.79 67.0 4.76e-01 93.0% 40.2%
6h9dA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.77 65.0 4.77e-01 100.0% 35.8%
2anvA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.77 67.0 5.00e-01 100.0% 39.7%
8b2sA01 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.69 58.0 4.22e-01 93.0% 35.7%
1ltzA00 1.10.800.10 Mainly Alpha › Orthogonal Bundle › Phenylalanine Hydroxylase › Aromatic amino acid hydroxylase 0.52 35.0 2.30e-01 71.9% 20.8%
3agrA02 3.30.420.540 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.50 41.0 2.61e-01 100.0% 65.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974990 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.87 75.0 5.90e-01 98.2% 48.2%
2439620 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.84 73.0 4.21e-01 93.0% 14.9%
3944610 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.83 70.0 5.01e-01 100.0% 33.3%
136932 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.81 74.0 5.19e-01 100.0% 35.8%
2665501 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.81 68.0 4.74e-01 93.0% 39.9%
156965 235.1.1.7 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme,Gp5_OB 0.81 68.0 4.51e-01 93.0% 32.4%
2771202 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.80 72.0 5.15e-01 100.0% 35.6%
3949298 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.78 69.0 4.83e-01 98.2% 32.0%
2488339 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.77 65.0 4.77e-01 100.0% 35.8%
4019669 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.77 68.0 4.97e-01 100.0% 38.1%
159686 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.77 67.0 5.00e-01 100.0% 39.7%
2524005 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.74 63.0 4.44e-01 94.7% 43.7%
3687721 376.1.6.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain 0.55 39.0 3.98e-01 78.9% 100.0%
3724406 376.1.4.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.54 41.0 3.98e-01 84.2% 89.2%
3927464 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.53 37.0 2.87e-01 73.7% 70.0%
3880983 376.1.4.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › PF26200 0.53 41.0 3.57e-01 94.7% 78.1%
3648918 7566.1.1.1 ↗ a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › GTP-bdg_N,GTP-bdg_M 0.52 36.0 2.42e-01 71.9% 51.5%
3386872 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.52 33.0 3.44e-01 75.4% 72.0%
2875150 3232.1.1.1 ↗ alpha arrays › PB2 '627' domain-related › PB2 '627' domain-related › Polymerase basic protein 2 (PB2) '627' domain 0.52 42.0 3.07e-01 100.0% 39.7%
3899094 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.52 34.0 2.66e-01 70.2% 59.5%
D2 medium residues 58-145
PDB
Domain cluster: rep: OP296522.1__UYD72070.1__VG_p22__00022__D95-199
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00959.25 best Phage_lysozyme 59.5 6.00e-16 93.2% 65.6%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6h9dA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.96 92.0 7.47e-01 100.0% 62.2%
3hdeC00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.96 92.0 7.18e-01 100.0% 53.7%
8b2sA01 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.93 88.0 7.06e-01 100.0% 59.7%
2anvA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.91 86.0 7.05e-01 100.0% 59.6%
8hp8A01 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.90 84.0 6.82e-01 100.0% 58.2%
1xjuA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.87 81.0 6.56e-01 100.0% 64.1%
3f7cA00 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.66 50.0 3.86e-01 80.7% 75.9%
1xg2B00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.66 49.0 4.13e-01 78.4% 69.5%
2datA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.66 49.0 4.45e-01 80.7% 81.3%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.65 33.0 3.18e-01 80.7% 42.7%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.64 48.0 4.47e-01 80.7% 85.8%
4hjzA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.64 55.0 4.38e-01 96.6% 65.6%
5figA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.64 47.0 4.58e-01 78.4% 97.0%
1f68A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.64 48.0 4.64e-01 81.8% 92.2%
3p5pA03 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.63 56.0 3.89e-01 100.0% 93.1%
2h5nC00 1.10.3680.10 Mainly Alpha › Orthogonal Bundle › TerB-like › TerB-like 0.62 48.0 4.32e-01 83.0% 85.5%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 46.0 4.41e-01 78.4% 94.1%
5k29A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.62 46.0 4.50e-01 80.7% 88.7%
2juaA00 1.20.1480.30 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Designed four-helix bundle protein 0.60 45.0 4.31e-01 79.5% 91.2%
4u04A02 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.60 43.0 3.21e-01 76.1% 45.9%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 45.0 4.52e-01 80.7% 95.4%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.59 38.0 4.27e-01 76.1% 87.7%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 4.06e-01 100.0% 65.3%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 43.0 3.98e-01 79.5% 94.1%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.56 45.0 3.88e-01 88.6% 81.9%
1z9hA03 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 32.0 2.72e-01 88.6% 33.1%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.55 40.0 4.47e-01 100.0% 98.5%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 38.0 3.66e-01 76.1% 71.7%
1td6A01 1.20.1480.10 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › hypothetical protein mp506/mpn330, domain 1 0.52 37.0 3.57e-01 76.1% 72.5%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2488339 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.96 92.0 7.47e-01 100.0% 62.2%
136932 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.95 91.0 7.14e-01 100.0% 53.3%
4834320 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.95 90.0 8.39e-01 100.0% 86.8%
2771202 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.94 90.0 7.14e-01 100.0% 57.5%
3944610 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.93 88.0 7.02e-01 100.0% 55.3%
4019669 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.93 88.0 7.05e-01 100.0% 59.4%
159686 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.91 86.0 7.05e-01 100.0% 59.6%
3949298 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.91 86.0 6.66e-01 100.0% 54.9%
3033455 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.90 84.0 6.71e-01 100.0% 55.3%
7422 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.87 81.0 6.56e-01 100.0% 64.1%
3214883 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.70 52.0 4.28e-01 78.4% 90.0%
3607681 633.10.1.15 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › Transmemb_17 0.67 50.0 4.35e-01 79.5% 81.5%
4383079 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.66 49.0 4.07e-01 78.4% 67.7%
3421659 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 49.0 3.75e-01 80.7% 44.3%
3853260 633.10.1.15 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › Transmemb_17 0.65 48.0 4.19e-01 78.4% 82.2%
4978846 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.65 48.0 4.42e-01 78.4% 92.1%
3888824 601.1.2.11 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › CD20 0.64 47.0 3.96e-01 77.3% 71.3%
3232632 633.10.1.15 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › Transmemb_17 0.62 46.0 4.04e-01 78.4% 77.7%
5029781 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.60 39.0 3.75e-01 78.4% 55.2%
4029927 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.60 40.0 3.83e-01 100.0% 59.0%
3261117 633.24.1.2 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 0.58 39.0 3.88e-01 70.5% 83.2%
3220072 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 29.0 2.68e-01 80.7% 37.4%
3591761 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 38.0 3.50e-01 79.5% 81.7%
3262164 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.51 43.0 3.18e-01 96.6% 86.9%