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KU935715.1__AND75172.1__ME3_11__00011

Bact-Vir

KU935715.1__AND75172.1__ME3_11__00011

Identity

Accession:
KU935715 ↗
Kingdom:
phage

Quality

71.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 321-437
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t9kA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.65 45.0 4.29e-01 100.0% 60.0%
2yvkA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.63 47.0 4.34e-01 100.0% 60.8%
1n5uA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.62 43.0 4.80e-01 100.0% 93.3%
2nutB01 1.20.120.730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain 0.55 44.0 4.03e-01 100.0% 65.4%
2rioA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 45.0 3.89e-01 100.0% 91.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2487011 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 21.0 2.58e-01 95.7% 41.0%
3723226 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.56 44.0 4.20e-01 82.9% 81.5%
4474711 3747.1.1.2 a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C 0.53 36.0 3.79e-01 100.0% 76.2%
3173026 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.51 44.0 3.85e-01 94.9% 84.6%
4525882 3747.1.1.3 a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bbr_C 0.51 37.0 3.93e-01 100.0% 84.8%
3179803 101.21.1.1 alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.50 34.0 3.36e-01 70.1% 66.2%
D2 medium residues 8-168
PDB
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p1jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.72 49.0 5.26e-01 88.8% 80.4%
7jw2A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.67 39.0 3.52e-01 90.1% 42.9%
2qxfA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.67 52.0 4.87e-01 91.3% 66.7%
1vk0A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 37.0 3.47e-01 91.3% 43.5%
1j9aA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 51.0 4.89e-01 92.5% 70.7%
7t2sA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 47.0 4.64e-01 91.9% 68.0%
1d5aA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.65 47.0 4.27e-01 100.0% 55.3%
2f96A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 49.0 4.50e-01 93.2% 68.7%
2petA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 29.0 3.38e-01 71.4% 68.7%
1y97A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 51.0 4.74e-01 98.1% 100.0%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.50 21.0 3.05e-01 96.3% 89.2%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5066483 2484.1.1.68 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.80 45.0 4.46e-01 88.8% 52.9%
4933243 2484.1.1.68 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.76 45.0 4.38e-01 91.3% 53.7%
3604297 2484.1.1.68 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.76 43.0 4.20e-01 90.7% 51.4%
5056095 2484.1.1.68 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.75 40.0 3.72e-01 93.2% 41.7%
3088601 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.75 52.0 5.08e-01 91.3% 65.7%
5055213 2484.1.1.68 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.75 45.0 4.30e-01 89.4% 51.3%
4037317 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.74 52.0 4.76e-01 91.3% 56.1%
4640906 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.74 51.0 4.79e-01 91.3% 58.5%
3839669 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.73 52.0 4.33e-01 91.9% 44.2%
3280151 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.73 52.0 4.95e-01 91.9% 62.7%
3980678 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.73 42.0 3.28e-01 89.4% 27.5%
4432985 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.73 51.0 4.76e-01 91.3% 58.0%
3971372 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.72 51.0 4.77e-01 90.7% 59.5%
3987574 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.72 35.0 2.85e-01 90.1% 25.8%
4876665 2484.1.1.58 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Taq-exonuc 0.72 33.0 3.57e-01 88.2% 50.4%
5080048 2484.1.1.68 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.71 44.0 4.34e-01 89.4% 57.1%
5068716 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.70 50.0 3.88e-01 100.0% 35.9%
5007230 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.70 49.0 4.57e-01 91.3% 58.5%
1236883 2484.1.1.96 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_polI_exo1 0.70 36.0 3.51e-01 89.4% 44.9%
5024550 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.70 49.0 4.74e-01 88.8% 64.4%
3342017 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.69 37.0 3.42e-01 90.1% 41.4%
3685910 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 37.0 3.37e-01 89.4% 39.5%
5017082 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.68 49.0 3.71e-01 99.4% 33.2%
4959100 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 46.0 3.80e-01 100.0% 40.0%
3819346 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 37.0 3.87e-01 91.3% 58.6%
4561919 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 32.0 2.80e-01 90.1% 29.8%
2725515 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.66 39.0 3.46e-01 89.4% 42.0%
5052601 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.66 47.0 4.43e-01 91.3% 61.4%
3250377 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.66 42.0 3.74e-01 90.7% 44.8%
4452101 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.66 48.0 4.28e-01 100.0% 54.5%
4298195 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.65 46.0 4.31e-01 92.5% 58.0%
4282509 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 47.0 3.21e-01 98.8% 21.1%
4029137 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.65 44.0 3.85e-01 92.5% 47.0%
3778404 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.65 50.0 4.58e-01 92.5% 61.4%
4019286 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 43.0 4.69e-01 90.1% 80.7%
3612874 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.63 51.0 4.17e-01 91.9% 48.2%
2810987 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.63 39.0 3.60e-01 92.5% 49.8%
3830378 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 37.0 3.48e-01 91.9% 48.5%
5081840 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.62 55.0 4.98e-01 93.8% 93.3%
3621625 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 38.0 3.56e-01 90.7% 49.7%
4044377 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 54.0 3.85e-01 96.9% 62.1%
1501363 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 53.0 3.80e-01 96.3% 63.2%
4381276 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.59 49.0 4.37e-01 93.8% 62.5%
4299237 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.59 49.0 4.47e-01 93.8% 67.1%
4044396 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.59 49.0 4.49e-01 94.4% 68.8%
4103309 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.58 52.0 4.68e-01 93.2% 95.2%
3941572 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.58 52.0 4.10e-01 96.9% 68.4%
3601137 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 43.0 4.04e-01 92.5% 62.5%
3682884 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.57 53.0 4.69e-01 99.4% 91.6%
5081301 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.57 53.0 3.88e-01 98.1% 47.9%
3608338 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.56 51.0 3.54e-01 97.5% 52.9%
3957139 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 52.0 4.82e-01 100.0% 98.0%
3953516 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.56 50.0 4.72e-01 96.9% 95.9%
3706908 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.55 51.0 4.15e-01 98.1% 96.1%
3759576 2484.1.1.288 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PML_C 0.55 50.0 4.23e-01 96.9% 79.6%
3557702 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.55 28.0 3.35e-01 72.0% 69.6%
4147965 2484.1.1.36 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 0.53 45.0 3.83e-01 93.2% 57.2%
3632169 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.51 44.0 3.94e-01 92.5% 74.8%
3735683 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 44.0 4.01e-01 92.5% 70.8%
None 0.51 42.0 3.02e-01 87.6% 93.0%
3163747 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 44.0 3.09e-01 93.8% 39.6%
D3 medium residues 195-317_493-519
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kbtA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 29.0 2.35e-01 70.7% 24.6%
2oyhA00 1.20.5.50 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 27.0 3.98e-01 80.7% 100.0%
2ynqB00 1.25.40.680 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain 0.56 32.0 3.29e-01 72.0% 55.6%
3c18A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.55 38.0 4.15e-01 72.0% 88.1%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 34.0 4.08e-01 96.0% 97.1%
6z0fA02 1.25.40.680 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain 0.51 30.0 2.98e-01 73.3% 52.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4189989 140.1.1.7 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.55 37.0 4.12e-01 75.3% 86.7%
4190254 159.1.1.4 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › PRA-PH 0.53 25.0 2.88e-01 71.3% 59.1%
4025964 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 41.0 3.04e-01 82.0% 45.7%
4508275 4946.1.1.1 alpha bundles › helical domain in YacF-like proteins › helical domain in YacF-like proteins › helical domain in YacF-like proteins › ZapD 0.51 36.0 3.45e-01 70.7% 91.2%
3990494 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.51 24.0 2.98e-01 72.0% 70.6%