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KU935715.1__AND75182.1__ME3_21__00021

Bact-Vir

KU935715.1__AND75182.1__ME3_21__00021

Identity

Accession:
KU935715 ↗
Kingdom:
phage

Quality

86.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Metrivirus› Acinetobacter_phage_vB_AbaM_ME3

TaxID: 1837876

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 174-297
PDB
Domain cluster: rep: IMGVR_UViG_3300002514_006596-3300002514-JGI25133J35611_100095474__D154-325
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.74 36.0 4.11e-01 100.0% 61.1%
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.68 34.0 3.89e-01 100.0% 64.5%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.53 32.0 3.99e-01 99.2% 100.0%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.52 31.0 3.69e-01 100.0% 93.5%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 18.0 2.63e-01 75.0% 68.8%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2808420 70.4.1.1 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.74 36.0 3.86e-01 100.0% 53.2%
3513462 70.4.1.8 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement 0.71 34.0 4.85e-01 100.0% 96.7%
2640772 70.4.1.1 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.68 34.0 3.75e-01 100.0% 60.0%
3945811 70.4.1.7 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.67 32.0 4.51e-01 98.4% 95.0%
5083816 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.63 34.0 4.40e-01 100.0% 92.9%
5002644 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.61 35.0 4.44e-01 99.2% 94.7%
4935036 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.57 32.0 4.07e-01 100.0% 94.5%
4602455 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.55 32.0 4.09e-01 100.0% 98.6%
4132820 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.53 29.0 3.14e-01 99.2% 60.0%
5075574 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.53 32.0 3.88e-01 100.0% 93.8%
D2 medium residues 34-171
PDB
Domain cluster: rep: IMGVR_UViG_3300002514_006596-3300002514-JGI25133J35611_100095474__D38-117_119-133_135-153
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.78 35.0 4.24e-01 100.0% 63.4%
4wz2C00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 28.0 3.64e-01 73.9% 87.8%
1uvgA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.53 24.0 3.36e-01 81.9% 94.8%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3718286 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.57 27.0 3.58e-01 84.8% 85.7%
3231525 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.57 27.0 3.61e-01 94.2% 87.1%
4000872 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.56 21.0 3.41e-01 88.4% 100.0%
3240417 379.1.1.1 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.55 21.0 3.30e-01 78.3% 92.0%
3484418 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.54 27.0 3.28e-01 73.9% 71.1%
4488994 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.54 27.0 3.60e-01 94.2% 95.4%
3621780 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.54 28.0 3.56e-01 73.9% 85.0%
157297 379.1.1.1 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.52 24.0 3.06e-01 73.9% 72.4%
3793771 376.1.1.15 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse 0.52 30.0 3.57e-01 95.7% 86.4%
3225707 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.51 27.0 3.61e-01 73.2% 100.0%
4364548 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.50 27.0 3.55e-01 94.2% 96.0%
3451778 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.50 29.0 2.97e-01 73.9% 57.0%