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KU935715.1__AND75344.1__ME3_183__00183

Bact-Vir

KU935715.1__AND75344.1__ME3_183__00183

Identity

Accession:
KU935715 ↗
Kingdom:
phage

Quality

82.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Metrivirus› Acinetobacter_phage_vB_AbaM_ME3

TaxID: 1837876

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-60
PDB
Domain cluster: rep: KJ473422.1__AHY26682.1__vB_AbaM_Acibel004_67__00067__D4-49
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.68 53.0 4.26e-01 88.3% 57.7%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.67 46.0 3.65e-01 71.7% 34.1%
3li9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.66 47.0 3.71e-01 75.0% 83.9%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.65 45.0 2.87e-01 71.7% 71.4%
1cyyA02 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.65 52.0 4.22e-01 93.3% 58.4%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.65 45.0 3.45e-01 76.7% 32.1%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 47.0 3.96e-01 78.3% 79.6%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 42.0 3.30e-01 70.0% 33.3%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.61 42.0 3.67e-01 73.3% 84.2%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 41.0 3.30e-01 73.3% 77.9%
4cgyA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.60 48.0 3.85e-01 91.7% 56.2%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.60 34.0 2.81e-01 83.3% 32.7%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 45.0 3.66e-01 85.0% 43.1%
3obaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 42.0 2.78e-01 78.3% 19.8%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 3.95e-01 73.3% 63.8%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 40.0 3.24e-01 70.0% 36.0%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.58 40.0 3.09e-01 75.0% 53.6%
1of5B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 38.0 3.09e-01 70.0% 45.3%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.57 39.0 2.90e-01 73.3% 51.8%
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.57 40.0 3.58e-01 76.7% 58.2%
2iayA00 3.30.1820.10 Alpha Beta › 2-Layer Sandwich › Lp2179-like fold › Lp2179-like 0.55 37.0 3.07e-01 71.7% 71.9%
6u8yK01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.55 43.0 3.22e-01 86.7% 61.7%
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 44.0 2.65e-01 88.3% 93.9%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 37.0 2.97e-01 73.3% 40.2%
2e3nA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 36.0 2.49e-01 70.0% 80.5%
3m2tA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 37.0 2.86e-01 75.0% 59.2%
1lc0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 37.0 2.93e-01 76.7% 53.1%
1tltA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 37.0 2.73e-01 78.3% 89.2%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 36.0 2.70e-01 78.3% 90.2%
6serA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 36.0 2.50e-01 76.7% 72.8%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.50 40.0 3.25e-01 98.3% 46.4%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5054994 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.81 53.0 5.84e-01 71.7% 85.4%
5004087 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.77 54.0 4.89e-01 73.3% 65.0%
5018717 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 49.0 5.13e-01 71.7% 85.5%
None — 0.71 48.0 3.51e-01 71.7% 25.3%
3630103 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 51.0 3.96e-01 76.7% 40.0%
3518995 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 51.0 3.63e-01 76.7% 32.0%
3502587 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.71 51.0 4.23e-01 76.7% 49.5%
4990492 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 49.0 5.22e-01 73.3% 88.0%
3514575 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 50.0 4.16e-01 76.7% 53.3%
3297271 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 47.0 3.01e-01 71.7% 14.9%
4991994 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 47.0 4.85e-01 71.7% 80.0%
3774525 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.68 46.0 3.33e-01 71.7% 23.9%
3485727 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.68 46.0 3.96e-01 71.7% 44.2%
3911618 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.67 51.0 3.68e-01 83.3% 38.3%
4954093 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.67 48.0 3.84e-01 78.3% 72.8%
3838288 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 47.0 3.81e-01 75.0% 46.1%
4977528 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.65 46.0 3.61e-01 75.0% 63.0%
4946576 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.65 51.0 3.71e-01 86.7% 52.3%
4945682 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 48.0 3.80e-01 78.3% 75.2%
4978172 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.65 47.0 4.10e-01 78.3% 92.6%
4022211 2003.1.2.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.64 46.0 2.85e-01 76.7% 28.8%
4977218 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.64 45.0 2.80e-01 75.0% 28.1%
4226251 375.1.1.252 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF27302 0.63 42.0 4.29e-01 73.3% 70.0%
5036880 330.1.1.35 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › LeuA_dimer 0.63 42.0 4.05e-01 70.0% 75.7%
3692621 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.62 51.0 3.99e-01 91.7% 55.4%
5055280 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.62 44.0 3.30e-01 75.0% 59.3%
5055120 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.62 47.0 3.94e-01 86.7% 60.0%
3965662 264.2.1.1 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.60 46.0 3.61e-01 86.7% 53.6%
3388201 264.2.1.1 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.60 46.0 3.67e-01 86.7% 53.8%
3593276 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 48.0 3.89e-01 93.3% 50.4%
4997059 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.59 41.0 3.84e-01 73.3% 61.3%
3586428 306.3.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.59 39.0 3.28e-01 70.0% 37.6%
3928239 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.58 41.0 2.65e-01 75.0% 46.3%
3626463 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 42.0 2.85e-01 81.7% 20.4%
3972580 331.1.1.3 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AlkA_N 0.55 42.0 3.83e-01 81.7% 76.2%
3805100 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.55 38.0 2.77e-01 75.0% 47.3%
5012515 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 37.0 3.19e-01 75.0% 70.5%
4571190 3692.1.1.1 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.53 37.0 2.91e-01 75.0% 78.4%
4928276 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.52 39.0 2.71e-01 81.7% 41.8%
3602793 7512.1.1.24 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 0.52 38.0 2.66e-01 81.7% 27.4%
3947887 283.2.1.9 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Sheath_initiator 0.52 36.0 3.02e-01 75.0% 84.3%
4553924 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.51 46.0 2.81e-01 100.0% 39.7%
184285 298.1.1.20 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › YceM-like_C 0.51 35.0 2.78e-01 73.3% 55.7%