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KU935715.1__AND75348.1__ME3_187__00187

Bact-Vir

KU935715.1__AND75348.1__ME3_187__00187

Identity

Accession:
KU935715 ↗
Kingdom:
phage

Quality

97.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Metrivirus› Acinetobacter_phage_vB_AbaM_ME3

TaxID: 1837876

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-62
PDB
Domain cluster: rep: MZ573780.2__QYC50873.1__X__00178__D6-60
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.71 44.0 5.17e-01 93.4% 100.0%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.65 55.0 4.95e-01 98.4% 93.3%
3imoC00 3.30.920.70 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.64 49.0 4.13e-01 90.2% 47.7%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 43.0 4.78e-01 98.4% 91.5%
2x6nD00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 47.0 3.58e-01 88.5% 49.4%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.62 52.0 4.25e-01 100.0% 69.4%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 53.0 4.51e-01 98.4% 59.0%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.61 47.0 4.22e-01 91.8% 59.8%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 51.0 4.19e-01 100.0% 95.9%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 51.0 4.38e-01 100.0% 88.5%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.60 52.0 4.11e-01 100.0% 60.9%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.60 41.0 4.07e-01 77.0% 68.3%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 4.49e-01 100.0% 75.0%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 44.0 4.04e-01 83.6% 65.1%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.59 48.0 4.33e-01 95.1% 91.1%
1wiiA01 2.20.25.190 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 45.0 4.52e-01 86.9% 91.9%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 51.0 4.19e-01 100.0% 79.8%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 4.00e-01 100.0% 66.9%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 49.0 4.10e-01 100.0% 84.3%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 4.26e-01 100.0% 89.8%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 46.0 3.94e-01 93.4% 65.7%
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.56 43.0 3.67e-01 88.5% 50.5%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 3.89e-01 100.0% 63.6%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 4.04e-01 100.0% 80.0%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 4.12e-01 100.0% 85.7%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 42.0 4.06e-01 86.9% 94.4%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 3.63e-01 100.0% 58.7%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.54 45.0 3.91e-01 98.4% 84.5%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 4.27e-01 100.0% 96.2%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.53 44.0 4.03e-01 100.0% 91.1%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.77e-01 100.0% 81.8%
2qh0A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 42.0 3.36e-01 88.5% 65.1%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 4.47e-01 100.0% 96.6%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 43.0 4.03e-01 100.0% 76.0%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 41.0 3.98e-01 100.0% 78.7%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.51 41.0 3.93e-01 93.4% 81.1%
4bd9B01 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.51 29.0 3.00e-01 100.0% 53.7%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.83e-01 93.4% 81.5%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.90e-01 88.5% 87.1%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 41.0 2.54e-01 95.1% 82.9%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028035 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.76 43.0 5.44e-01 93.4% 97.1%
3797569 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.73 55.0 5.71e-01 80.3% 94.5%
3620234 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.73 42.0 3.04e-01 88.5% 21.9%
3630007 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.72 59.0 4.87e-01 90.2% 60.0%
3622767 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.72 58.0 5.03e-01 88.5% 58.9%
3492787 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.71 53.0 3.80e-01 100.0% 27.8%
5013176 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.67 59.0 5.52e-01 100.0% 90.7%
3703442 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 56.0 5.12e-01 100.0% 84.7%
3210512 220.1.1.214 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_C 0.65 56.0 4.62e-01 100.0% 87.8%
3743299 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.63 54.0 4.57e-01 100.0% 56.4%
4245466 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.63 42.0 4.64e-01 100.0% 86.0%
3503815 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 44.0 3.96e-01 100.0% 54.1%
3936886 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.62 47.0 3.67e-01 88.5% 53.5%
3622055 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 43.0 3.93e-01 100.0% 54.1%
3264806 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 41.0 4.37e-01 96.7% 84.0%
5079258 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.61 42.0 4.62e-01 78.7% 100.0%
5042834 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.61 47.0 3.59e-01 85.2% 53.3%
3890922 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.61 52.0 4.45e-01 100.0% 69.5%
3393360 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 42.0 3.50e-01 100.0% 40.0%
3646226 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.60 46.0 4.29e-01 86.9% 87.5%
4933213 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.60 46.0 4.51e-01 88.5% 81.4%
3514906 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 42.0 3.02e-01 100.0% 24.2%
3620992 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.60 43.0 4.57e-01 95.1% 94.0%
3911241 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 41.0 3.53e-01 100.0% 45.0%
3991244 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.59 39.0 4.28e-01 98.4% 93.3%
3903260 109.4.1.2707 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PH_21 0.59 45.0 2.79e-01 88.5% 13.4%
3308710 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 42.0 4.03e-01 80.3% 65.7%
4963111 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.59 38.0 4.32e-01 96.7% 91.1%
3482073 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 46.0 4.64e-01 85.2% 91.7%
3609031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 3.72e-01 100.0% 49.0%
3164374 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.58 39.0 4.24e-01 96.7% 86.0%
4940485 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 49.0 3.98e-01 98.4% 79.2%
4930465 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.58 39.0 3.96e-01 70.5% 73.3%
3510695 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 46.0 4.32e-01 91.8% 77.5%
3475965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 38.0 4.24e-01 96.7% 95.6%
3501699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 3.84e-01 100.0% 60.0%
3965976 809.1.1.1 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA 0.57 43.0 3.89e-01 88.5% 57.4%
4618205 604.1.1.150 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 0.57 44.0 3.60e-01 86.9% 85.0%
3774108 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 39.0 3.43e-01 100.0% 47.4%
3418892 5.1.8.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › DUF295 0.56 38.0 3.27e-01 73.8% 55.7%
3176989 601.19.1.40 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PF28954 0.56 45.0 3.39e-01 90.2% 71.2%
3585833 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 48.0 3.98e-01 96.7% 62.7%
4386701 310.2.1.35 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PF28954 0.56 45.0 3.49e-01 91.8% 77.2%
5050743 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.56 42.0 3.28e-01 86.9% 91.0%
3922240 3755.3.1.321 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WHAMM-JMY_N 0.56 42.0 3.56e-01 83.6% 89.1%
3515433 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.55 43.0 4.27e-01 88.5% 95.4%
3672898 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.55 41.0 3.44e-01 86.9% 93.6%
3785991 241.15.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.55 42.0 3.66e-01 88.5% 66.3%
3427749 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.55 45.0 4.46e-01 93.4% 92.3%
4966836 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 42.0 4.31e-01 93.4% 98.2%
3592541 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 41.0 3.77e-01 100.0% 62.5%
3626694 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 40.0 3.60e-01 100.0% 55.6%
3229204 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 41.0 4.31e-01 98.4% 96.4%
5021659 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 39.0 3.48e-01 78.7% 58.9%
3510389 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 40.0 3.66e-01 85.2% 76.4%
3589823 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 43.0 4.23e-01 90.2% 86.2%
3627795 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 3.90e-01 91.8% 68.2%
3328891 4.1.1.296 ↗ beta barrels › SH3 › SH3 › SH3 › TDBD 0.53 46.0 4.55e-01 100.0% 96.9%
3815479 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 43.0 4.04e-01 100.0% 74.7%
3921260 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 39.0 3.29e-01 86.9% 48.3%
3706282 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.52 43.0 3.50e-01 93.4% 85.8%
3433500 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.50 34.0 3.63e-01 91.8% 90.0%