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KU958700.1__AMS01597.1__SEA_CHYMERA_38__00038
Bact-VirKU958700.1__AMS01597.1__SEA_CHYMERA_38__00038
Identity
- Accession:
- KU958700 ↗
- Kingdom:
- phage
Quality
72.9
mean pLDDT
Taxonomy
TaxID: 1821728
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 54-146
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bp6B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.73 | 46.0 | 4.80e-01 | 81.7% | 68.2% |
| 3kyfA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.68 | 60.0 | 5.56e-01 | 100.0% | 76.9% |
| 3zugB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.68 | 54.0 | 4.70e-01 | 86.0% | 57.7% |
| 1wruA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.66 | 56.0 | 4.55e-01 | 96.8% | 49.1% |
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.66 | 42.0 | 4.54e-01 | 84.9% | 75.9% |
| 4gf3A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.66 | 47.0 | 4.26e-01 | 100.0% | 56.1% |
| 2p5zX01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.64 | 53.0 | 4.42e-01 | 92.5% | 51.2% |
| 5jv4A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.64 | 57.0 | 5.00e-01 | 100.0% | 88.0% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.64 | 53.0 | 4.89e-01 | 100.0% | 70.5% |
| 1s28A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.63 | 44.0 | 3.94e-01 | 100.0% | 52.3% |
| 2basA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.62 | 47.0 | 4.36e-01 | 79.6% | 90.5% |
| 1l3lA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.62 | 45.0 | 3.67e-01 | 76.3% | 65.3% |
| 2anrA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.62 | 36.0 | 4.04e-01 | 73.1% | 73.3% |
| 1twfB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.61 | 44.0 | 4.04e-01 | 75.3% | 91.1% |
| 4lrzE02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.61 | 42.0 | 4.21e-01 | 100.0% | 70.2% |
| 1boqA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 51.0 | 4.92e-01 | 100.0% | 82.2% |
| 1s67L00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 42.0 | 3.86e-01 | 73.1% | 89.1% |
| 4liqE05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 44.0 | 4.33e-01 | 80.6% | 73.0% |
| 4binA01 | 2.60.40.3500 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 47.0 | 4.35e-01 | 90.3% | 68.1% |
| 1xuvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 44.0 | 3.66e-01 | 79.6% | 76.7% |
| 3rghA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 39.0 | 3.88e-01 | 82.8% | 65.6% |
| 1mruA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 45.0 | 4.53e-01 | 100.0% | 83.7% |
| 3dmeA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.58 | 43.0 | 3.70e-01 | 92.5% | 48.4% |
| 2veaA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 42.0 | 3.75e-01 | 76.3% | 70.8% |
| 4ew7A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 41.0 | 3.85e-01 | 74.2% | 88.5% |
| 1wzlA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 42.0 | 3.90e-01 | 92.5% | 59.5% |
| 2xrnA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.56 | 42.0 | 3.38e-01 | 78.5% | 76.3% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 32.0 | 3.60e-01 | 100.0% | 73.9% |
| 1xfsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 38.0 | 3.17e-01 | 71.0% | 76.6% |
| 6lgqC01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.54 | 49.0 | 4.40e-01 | 100.0% | 93.1% |
| 4r7kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 37.0 | 3.06e-01 | 71.0% | 71.4% |
| 3oc5A02 | 2.60.40.3240 | Mainly Beta › Sandwich › Immunoglobulin-like › Vibrio cholerae toxin co-regulated pilus biosynthesis protein F, C-terminal domain | 0.53 | 42.0 | 3.67e-01 | 84.9% | 61.0% |
| 3b33A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 39.0 | 3.71e-01 | 100.0% | 67.0% |
| 3e8tA00 | 3.15.10.30 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain | 0.53 | 37.0 | 2.89e-01 | 73.1% | 61.6% |
| 1a1xA00 | 2.40.15.10 | Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 | 0.52 | 45.0 | 4.36e-01 | 97.8% | 83.0% |
| 1id0A00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 47.0 | 4.03e-01 | 100.0% | 94.5% |
| 5l09B00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.52 | 46.0 | 3.81e-01 | 96.8% | 74.4% |
| 4wsfA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 37.0 | 3.49e-01 | 74.2% | 81.1% |
| 4hh2B03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 37.0 | 3.66e-01 | 100.0% | 70.0% |
| 3by9B01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 37.0 | 3.36e-01 | 78.5% | 78.6% |
| 2kwbA00 | 2.170.150.10 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A | 0.50 | 37.0 | 2.99e-01 | 77.4% | 86.3% |
| 2r55A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 45.0 | 3.48e-01 | 100.0% | 69.2% |
| 3aabB00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 43.0 | 4.15e-01 | 95.7% | 86.8% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5048974 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 43.0 | 4.06e-01 | 100.0% | 51.8% |
| 184471 | 1.1.13.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st | 0.68 | 57.0 | 5.94e-01 | 95.7% | 100.0% |
| 4988103 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.65 | 56.0 | 5.65e-01 | 97.8% | 98.9% |
| 5041372 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.65 | 55.0 | 5.66e-01 | 94.6% | 97.8% |
| 4141852 | 1.1.13.56 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ | 0.64 | 53.0 | 5.49e-01 | 96.8% | 100.0% |
| 3968713 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.64 | 55.0 | 5.61e-01 | 96.8% | 98.9% |
| 3401870 | 11.1.1.214 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N | 0.64 | 50.0 | 4.55e-01 | 82.8% | 67.5% |
| 3238632 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.63 | 41.0 | 4.23e-01 | 94.6% | 68.9% |
| 3741921 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.62 | 51.0 | 4.90e-01 | 90.3% | 79.0% |
| 3269882 | 11.1.1.214 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N | 0.62 | 48.0 | 4.68e-01 | 82.8% | 76.0% |
| 3805726 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 45.0 | 4.15e-01 | 86.0% | 60.0% |
| 3714441 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.61 | 48.0 | 3.27e-01 | 100.0% | 24.8% |
| 3198907 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 45.0 | 4.65e-01 | 95.7% | 84.7% |
| 3246291 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.59 | 46.0 | 4.14e-01 | 81.7% | 77.8% |
| 3638266 | 11.1.1.554 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PhoD_2 | 0.59 | 44.0 | 4.39e-01 | 96.8% | 74.0% |
| 6317 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.59 | 44.0 | 3.66e-01 | 79.6% | 76.7% |
| 3959643 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 44.0 | 4.50e-01 | 87.1% | 84.4% |
| 3219409 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 43.0 | 4.37e-01 | 98.9% | 80.0% |
| 3437290 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.58 | 50.0 | 3.89e-01 | 100.0% | 42.3% |
| 3820521 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.57 | 37.0 | 2.60e-01 | 71.0% | 20.3% |
| 3008894 | 1.4.1.1 ↗ | beta barrels › cradle loop barrel › N-terminal domain of poxin › N-terminal domain of poxin › Baculo_p26 | 0.57 | 47.0 | 4.05e-01 | 98.9% | 54.3% |
| 5040786 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 51.0 | 4.42e-01 | 100.0% | 77.2% |
| 3967986 | 4.7.1.2 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF | 0.56 | 40.0 | 4.33e-01 | 75.3% | 93.8% |
| 3465399 | 331.3.1.43 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C | 0.56 | 41.0 | 3.06e-01 | 76.3% | 66.7% |
| 3249466 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 41.0 | 3.82e-01 | 96.8% | 61.7% |
| 4884154 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 44.0 | 3.69e-01 | 87.1% | 53.3% |
| 5025895 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 44.0 | 4.28e-01 | 87.1% | 83.8% |
| 3848539 | 58.1.1.1 ↗ | beta barrels › Oncogene product-like › Oncogene products › Oncogene products › TCL1_MTCP1 | 0.56 | 49.0 | 4.57e-01 | 96.8% | 85.2% |
| 3395651 | 223.2.1.32 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 | 0.55 | 49.0 | 4.05e-01 | 95.7% | 72.5% |
| 5022323 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 37.0 | 4.26e-01 | 97.8% | 100.0% |
| 3241393 | 11.1.1.408 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF281 | 0.55 | 35.0 | 3.66e-01 | 93.5% | 70.6% |
| 4929322 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.55 | 30.0 | 3.02e-01 | 94.6% | 49.0% |
| 3648015 | 9.1.1.21 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Cyclin_D1_bind | 0.55 | 40.0 | 3.34e-01 | 78.5% | 72.4% |
| 3956579 | 11.1.1.949 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28476 | 0.55 | 42.0 | 3.74e-01 | 82.8% | 57.8% |
| 3937103 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 42.0 | 3.73e-01 | 82.8% | 57.0% |
| 3708407 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.54 | 41.0 | 4.28e-01 | 98.9% | 88.2% |
| 3939580 | 304.107.1.7 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › POP1_N+POPLD | 0.54 | 47.0 | 3.17e-01 | 100.0% | 63.4% |
| 3388457 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.53 | 37.0 | 3.63e-01 | 80.6% | 67.0% |
| 166133 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.53 | 39.0 | 3.71e-01 | 100.0% | 67.0% |
| 3405953 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.53 | 39.0 | 3.75e-01 | 82.8% | 68.6% |
| 3192718 | 12.1.1.34 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 | 0.51 | 43.0 | 3.87e-01 | 92.5% | 89.9% |
| 4219607 | 864.1.1.0 ↗ | a+b two layers › DLC › DLC › DLC | 0.51 | 42.0 | 3.99e-01 | 89.2% | 95.4% |