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KU958700.1__AMS01600.1__SEA_CHYMERA_41__00041
Bact-VirKU958700.1__AMS01600.1__SEA_CHYMERA_41__00041
Identity
- Accession:
- KU958700 ↗
- Kingdom:
- phage
Quality
90.3
mean pLDDT
Taxonomy
TaxID: 1821728
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-65
Domain cluster:
rep: MT451981.1__QKN87631.1__SEA_VONDRA_46__00046__D7-55
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24623.3 best | Phage_zn_bind_8 | 39.0 | 7.20e-10 | 96.8% | 84.2% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2freA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.67 | 42.0 | 2.90e-01 | 90.3% | 20.1% |
| 2apoB00 | 2.20.28.40 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › H/ACA ribonucleoprotein complex, subunit Nop10 | 0.62 | 29.0 | 3.14e-01 | 85.5% | 47.3% |
| 4onsB00 | 6.10.250.2780 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.58 | 39.0 | 4.04e-01 | 87.1% | 76.8% |
| 1tf5A04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.55 | 46.0 | 3.41e-01 | 98.4% | 98.9% |
| 1x9nA01 | 1.10.3260.10 | Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain | 0.52 | 44.0 | 2.92e-01 | 96.8% | 82.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3373950 | 101.1.2.288 ↗ | alpha arrays › HTH › HTH › winged helix domain › Stk19 | 0.74 | 32.0 | 3.08e-01 | 77.4% | 34.3% |
| 3752375 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.69 | 53.0 | 3.68e-01 | 82.3% | 89.2% |
| 3706461 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.66 | 53.0 | 4.37e-01 | 93.5% | 49.1% |
| 3417238 | 109.4.1.152 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPN7 | 0.59 | 42.0 | 2.59e-01 | 74.2% | 25.0% |
| 3231276 | 109.4.1.257 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 | 0.59 | 46.0 | 2.73e-01 | 83.9% | 37.0% |
| 5004469 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.59 | 45.0 | 3.09e-01 | 88.7% | 24.4% |
| 3965108 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.53 | 41.0 | 2.89e-01 | 85.5% | 27.2% |
| 4929631 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 41.0 | 2.98e-01 | 87.1% | 97.8% |
| 4464010 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.50 | 39.0 | 2.70e-01 | 85.5% | 24.1% |
D2
high
residues 138-188
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zcoA00 | 1.10.10.2450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.66 | 35.0 | 2.62e-01 | 84.3% | 19.7% |
| 1ci9A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.59 | 47.0 | 2.91e-01 | 100.0% | 96.6% |
| 4fhdA02 | 3.80.30.30 | Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › | 0.59 | 44.0 | 2.94e-01 | 84.3% | 47.6% |
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.58 | 42.0 | 3.97e-01 | 84.3% | 64.5% |
| 5b7hB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.58 | 47.0 | 3.87e-01 | 100.0% | 90.7% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 39.0 | 3.13e-01 | 70.6% | 57.1% |
| 3h5qA03 | 3.90.1170.30 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Pyrimidine nucleoside phosphorylase-like, C-terminal domain | 0.57 | 38.0 | 3.24e-01 | 70.6% | 92.5% |
| 2ethA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 38.0 | 2.88e-01 | 72.5% | 42.6% |
| 2v3uA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 45.0 | 3.43e-01 | 100.0% | 85.7% |
| 5aedA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.56 | 45.0 | 3.87e-01 | 100.0% | 74.7% |
| 2hqyA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 38.0 | 2.94e-01 | 74.5% | 52.3% |
| 3zmdA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 37.0 | 2.77e-01 | 72.5% | 41.2% |
| 2dk5A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 36.0 | 3.42e-01 | 70.6% | 92.4% |
| 4mt1A07 | 3.30.70.1440 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.54 | 37.0 | 3.06e-01 | 74.5% | 77.5% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.53 | 40.0 | 3.98e-01 | 90.2% | 78.2% |
| 1lj9B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 36.0 | 2.72e-01 | 70.6% | 40.8% |
| 1nh8A03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 35.0 | 3.32e-01 | 70.6% | 62.7% |
| 7dvrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 35.0 | 2.70e-01 | 72.5% | 43.3% |
| 2nyxB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 34.0 | 2.61e-01 | 70.6% | 40.8% |
| 3cxbB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 42.0 | 3.47e-01 | 100.0% | 98.1% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4951965 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.68 | 37.0 | 2.19e-01 | 82.4% | 7.8% |
| 5011183 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.63 | 34.0 | 2.65e-01 | 86.3% | 23.6% |
| 4950216 | 4100.1.1.3 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox | 0.59 | 40.0 | 4.10e-01 | 72.5% | 75.0% |
| 2123445 | 1163.1.1.1 ↗ | alpha arrays › IcmS › IcmS › IcmS › T4bSS_IcmS | 0.58 | 40.0 | 3.14e-01 | 72.5% | 84.3% |
| 4979997 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.58 | 41.0 | 3.04e-01 | 88.2% | 27.9% |
| 3391349 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.57 | 46.0 | 3.39e-01 | 100.0% | 80.6% |
| 3229728 | 387.1.7.1 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold › Lustrin_cystein | 0.57 | 40.0 | 4.23e-01 | 74.5% | 97.6% |
| 5059033 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.56 | 40.0 | 3.26e-01 | 78.4% | 56.2% |
| 3416523 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.56 | 45.0 | 3.31e-01 | 100.0% | 72.4% |
| 3500763 | 387.1.3.8 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Colipase-like › Lustrin_cystein | 0.56 | 38.0 | 4.01e-01 | 72.5% | 95.5% |
| 3508474 | 387.1.7.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold | 0.55 | 37.0 | 3.91e-01 | 70.6% | 82.2% |
| 3907844 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.55 | 42.0 | 2.89e-01 | 100.0% | 23.2% |
| 3752375 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.55 | 43.0 | 2.89e-01 | 100.0% | 22.6% |
| 4991432 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 38.0 | 3.05e-01 | 72.5% | 54.5% |
| 5045168 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 36.0 | 2.63e-01 | 70.6% | 54.9% |
| 3704741 | 148.1.3.174 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RHSP | 0.54 | 36.0 | 2.88e-01 | 72.5% | 40.8% |
| 3688260 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.53 | 41.0 | 3.42e-01 | 92.2% | 80.0% |
| 4638765 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.53 | 35.0 | 2.70e-01 | 70.6% | 38.8% |
| 3947990 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.53 | 43.0 | 3.66e-01 | 100.0% | 97.9% |
| 3238923 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.53 | 41.0 | 2.42e-01 | 96.1% | 23.1% |
| 3797519 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 41.0 | 2.41e-01 | 96.1% | 22.4% |
| 3343188 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.52 | 41.0 | 3.08e-01 | 92.2% | 51.4% |
| 5051882 | 101.1.2.143 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_34 | 0.51 | 35.0 | 2.82e-01 | 70.6% | 50.0% |
| 3283013 | 3576.1.1.1 ↗ | a+b complex topology › Cas8-like › Cascade subunit CasA/Cse1/Cas8 › Cascade subunit CasA/Cse1/Cas8 › CRISPR_Cse1 | 0.51 | 37.0 | 2.21e-01 | 80.4% | 32.1% |
| 4952992 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.51 | 34.0 | 2.57e-01 | 70.6% | 39.3% |
| 3520761 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.51 | 41.0 | 3.33e-01 | 96.1% | 87.3% |
| 3288866 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 43.0 | 3.34e-01 | 100.0% | 71.7% |