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KU958700.1__AMS01605.1__SEA_CHYMERA_46__00046

Bact-Vir

KU958700.1__AMS01605.1__SEA_CHYMERA_46__00046

Identity

Accession:
KU958700 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chymeravirus› Streptomyces_phage_Chymera

TaxID: 1821728

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-74
PDB
Domain cluster: rep: NC_055753.1__YP_010096840.1__KNT97_gp48__00048__D2-70
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 34.0 3.87e-01 89.6% 68.8%
3cngA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.60 31.0 3.95e-01 95.5% 97.1%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 31.0 3.40e-01 89.6% 57.9%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.57 48.0 4.06e-01 100.0% 96.0%
5a48B00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.54 36.0 3.25e-01 70.1% 85.4%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.51 41.0 4.02e-01 88.1% 79.7%
2mlbA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 36.0 3.46e-01 76.1% 94.9%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 37.0 3.17e-01 85.1% 93.1%
3vkwA01 3.30.450.420 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 42.0 3.37e-01 100.0% 80.0%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 27.0 2.85e-01 86.6% 54.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053202 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.72 40.0 4.92e-01 100.0% 92.3%
4940157 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.66 34.0 3.70e-01 92.5% 60.0%
3689992 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 48.0 3.16e-01 80.6% 43.1%
3673333 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.64 46.0 3.71e-01 76.1% 71.2%
3836094 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.62 46.0 3.74e-01 79.1% 60.8%
3802920 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.60 42.0 3.42e-01 73.1% 75.0%
3677446 12.5.1.14 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › DUF1191 0.59 45.0 3.33e-01 83.6% 50.8%
3958893 1077.1.1.0 ↗ few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain 0.56 40.0 4.44e-01 77.6% 100.0%
3974451 3070.1.1.0 ↗ a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.53 38.0 3.59e-01 77.6% 88.2%
3929103 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.52 35.0 3.65e-01 70.1% 91.7%
3811693 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 40.0 2.69e-01 86.6% 45.5%
4295284 1077.1.1.1 ↗ few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS 0.51 44.0 4.29e-01 95.5% 86.7%
3954764 316.1.1.68 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF28438 0.51 44.0 4.29e-01 97.0% 88.0%