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KU963248.1__AMS02550.1__SEA_YVONNETASTIC_1__00001

Bact-Vir

KU963248.1__AMS02550.1__SEA_YVONNETASTIC_1__00001

Identity

Accession:
KU963248 ↗
Kingdom:
phage

Quality

83.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yvonnevirus› Gordonia_phage_Yvonnetastic

TaxID: 1821566

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-81
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.66 39.0 4.63e-01 96.1% 93.8%
1tk7A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.65 25.0 3.48e-01 76.6% 64.9%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.65 41.0 4.65e-01 98.7% 89.3%
2f4mA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 39.0 4.71e-01 93.5% 96.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 37.0 3.76e-01 100.0% 58.7%
1lgpA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.62 34.0 3.02e-01 77.9% 37.2%
1twfI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 38.0 3.86e-01 98.7% 63.2%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 37.0 3.89e-01 100.0% 69.6%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.54 30.0 2.03e-01 100.0% 12.5%
8bxrA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.90e-01 96.1% 69.5%
1zy9A03 2.60.40.2760 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 29.0 3.51e-01 100.0% 93.0%
2qlvB02 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 25.0 3.24e-01 83.1% 89.5%
4kc3B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.76e-01 97.4% 71.6%
4q9cA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 4.00e-01 97.4% 73.3%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.51 29.0 3.28e-01 90.9% 75.4%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4968628 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 41.0 5.34e-01 96.1% 100.0%
3343242 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 40.0 5.29e-01 97.4% 100.0%
3710675 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.74 44.0 5.40e-01 98.7% 95.8%
4980041 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 42.0 5.32e-01 96.1% 97.8%
5032252 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 42.0 5.08e-01 97.4% 88.0%
4966836 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 43.0 4.91e-01 98.7% 81.8%
5040906 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 38.0 4.97e-01 94.8% 100.0%
3309343 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.71 41.0 4.75e-01 94.8% 80.0%
3737071 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.70 43.0 4.77e-01 98.7% 79.7%
4013714 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 41.0 5.09e-01 97.4% 95.8%
5000687 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 41.0 4.57e-01 97.4% 77.6%
4963635 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.69 43.0 4.49e-01 100.0% 69.6%
4932673 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.68 40.0 3.77e-01 93.5% 48.9%
4937130 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.65 40.0 4.29e-01 98.7% 72.3%
3712524 375.1.1.77 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 0.64 32.0 3.75e-01 94.8% 67.3%
4311698 241.2.1.6 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › PF26204 0.63 34.0 3.02e-01 100.0% 36.4%
3598807 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 32.0 3.39e-01 96.1% 55.1%
3650304 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.59 27.0 3.01e-01 77.9% 48.3%
3445009 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.58 35.0 2.74e-01 98.7% 25.7%
5065631 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.54 42.0 4.53e-01 100.0% 100.0%
3988706 243.3.1.13 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5590 0.53 34.0 3.56e-01 100.0% 72.9%
4986717 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 40.0 4.26e-01 98.7% 98.5%