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KX077179.1__ANT39877.1__Rhks_6__00006

Bact-Vir

KX077179.1__ANT39877.1__Rhks_6__00006

Identity

Accession:
KX077179 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-48
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r31A01 3.30.2180.10 Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like 0.82 72.0 6.34e-01 97.8% 72.7%
2a4vA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.79 66.0 4.60e-01 95.6% 82.4%
4r2qA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.75 48.0 3.85e-01 71.1% 34.1%
1wxcB01 3.30.1880.10 Alpha Beta › 2-Layer Sandwich › protein ne1242 fold › protein ne1242 domain like 0.74 54.0 4.91e-01 84.4% 58.1%
7vbnL01 3.30.160.190 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › atu1810 like domain 0.74 56.0 4.45e-01 84.4% 70.5%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.71 60.0 4.72e-01 100.0% 46.5%
3id6A01 3.30.420.220 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.70 52.0 4.01e-01 82.2% 54.7%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 58.0 4.52e-01 100.0% 44.0%
3zm6A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.68 57.0 3.70e-01 97.8% 21.5%
2d4aA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.68 49.0 3.33e-01 77.8% 30.6%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 56.0 4.36e-01 100.0% 45.7%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 52.0 3.72e-01 93.3% 28.6%
2pvpA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 39.0 2.88e-01 91.1% 21.0%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 51.0 3.73e-01 95.6% 30.6%
1hcdA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 42.0 3.16e-01 71.1% 50.8%
7oode01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.62 46.0 4.09e-01 82.2% 61.8%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 51.0 4.04e-01 100.0% 43.3%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 43.0 3.62e-01 75.6% 63.7%
5zx8A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.61 52.0 3.47e-01 100.0% 86.0%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.61 44.0 3.67e-01 82.2% 43.9%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 46.0 3.70e-01 91.1% 67.3%
5cflA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.60 51.0 3.60e-01 100.0% 70.1%
1o22A00 3.90.1000.10 Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 0.60 51.0 3.59e-01 95.6% 63.1%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 3.82e-01 86.7% 97.4%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 42.0 3.97e-01 80.0% 62.1%
3rioA01 2.30.24.10 Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain 0.57 46.0 4.03e-01 91.1% 82.4%
2kcwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 44.0 3.08e-01 84.4% 59.2%
1iv8A02 3.30.1590.10 Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 0.57 46.0 3.54e-01 97.8% 37.3%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 36.0 2.90e-01 100.0% 34.4%
2w5qA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 48.0 3.75e-01 100.0% 58.1%
1l5jA02 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.53 43.0 2.73e-01 86.7% 58.5%
2a6aB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 40.0 3.19e-01 100.0% 38.7%
2aw4Z00 4.10.830.30 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 0.50 35.0 3.14e-01 75.6% 84.3%
2hg7A00 3.30.56.60 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › XkdW-like 0.50 42.0 3.87e-01 95.6% 98.3%
1vs9F02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.50 35.0 3.20e-01 80.0% 100.0%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3164102 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.81 68.0 6.90e-01 93.3% 97.8%
3969097 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.79 69.0 6.73e-01 97.8% 96.0%
3943930 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.79 68.0 6.61e-01 97.8% 100.0%
4251998 296.1.1.3 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.79 64.0 5.06e-01 97.8% 44.2%
5079258 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.79 65.0 6.51e-01 91.1% 91.1%
3633734 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.78 65.0 5.26e-01 93.3% 50.6%
4941253 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.78 68.0 5.27e-01 100.0% 56.0%
3598612 220.1.1.230 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26289 0.74 60.0 4.76e-01 93.3% 44.4%
4010978 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.74 66.0 4.92e-01 100.0% 62.7%
4969758 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.73 63.0 5.06e-01 100.0% 52.2%
3602759 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 57.0 5.15e-01 93.3% 63.3%
3882796 1021.1.1.2 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD 0.73 63.0 5.15e-01 100.0% 52.9%
3508939 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.71 59.0 4.25e-01 100.0% 32.3%
3515993 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.71 59.0 4.30e-01 100.0% 35.0%
4992470 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.70 59.0 5.38e-01 100.0% 70.0%
5001238 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 60.0 4.57e-01 100.0% 44.5%
3838957 3439.1.1.0 a+b two layers › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain 0.69 55.0 4.79e-01 88.9% 95.7%
3236563 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.69 52.0 3.71e-01 80.0% 85.6%
4023242 220.1.1.187 beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.69 60.0 4.36e-01 100.0% 36.0%
4959480 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.68 55.0 5.14e-01 95.6% 71.7%
3928803 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.68 60.0 3.87e-01 100.0% 27.0%
3513564 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.68 53.0 4.73e-01 86.7% 87.7%
3267918 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 53.0 5.01e-01 91.1% 72.7%
4969162 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.67 58.0 5.36e-01 100.0% 75.0%
3225702 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 53.0 5.49e-01 91.1% 100.0%
3549045 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.65 56.0 4.24e-01 97.8% 42.7%
4056475 296.1.1.3 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.65 51.0 4.17e-01 100.0% 43.7%
3706686 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.65 53.0 4.80e-01 100.0% 66.2%
4959886 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.63 54.0 5.07e-01 100.0% 80.0%
5022340 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 46.0 4.14e-01 84.4% 60.0%
3212555 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.61 45.0 3.29e-01 100.0% 27.7%
4991902 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.61 47.0 3.41e-01 82.2% 88.3%
4944397 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 46.0 4.48e-01 84.4% 96.0%
3525333 5.1.4.416 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › HPS3_N, HPS3_C 0.59 51.0 3.04e-01 93.3% 66.7%
4995163 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.59 49.0 3.07e-01 93.3% 21.7%
5016928 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.58 47.0 3.00e-01 91.1% 47.7%
3587925 220.1.1.242 beta barrels › PH domain-like › PH domain-like › PH domain-like › EbsA 0.58 46.0 3.98e-01 97.8% 54.7%
4989457 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 44.0 4.29e-01 86.7% 80.0%
4995140 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.57 43.0 3.21e-01 91.1% 58.6%
3217638 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 44.0 3.87e-01 91.1% 57.3%
4002643 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 44.0 2.99e-01 88.9% 22.6%
4307219 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.56 40.0 3.82e-01 97.8% 61.8%
4177935 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.53 50.0 3.59e-01 100.0% 80.9%
3877107 1170.1.1.3 beta barrels › IL8-related › IL8-related › IL8 › CXCL16 0.52 37.0 3.28e-01 82.2% 54.7%
D2 medium residues 50-79
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d00A02 3.30.60.80 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.81 62.0 6.23e-01 93.3% 86.7%
4uf0A03 2.10.110.20 Mainly Beta › Ribbon › Cysteine Rich Protein › 0.76 66.0 5.13e-01 100.0% 69.2%
4qf3A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.71 55.0 4.73e-01 100.0% 68.4%
4mtdA02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.68 58.0 4.59e-01 100.0% 84.1%
2fe3A02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.67 55.0 4.58e-01 100.0% 93.0%
2ds5A00 6.20.220.10 Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain 0.65 51.0 4.75e-01 100.0% 81.4%
3vhtB02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.63 48.0 4.68e-01 100.0% 76.5%
3mwmA02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.61 47.0 3.99e-01 90.0% 96.2%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3622966 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.92 79.0 7.14e-01 100.0% 72.5%
3537307 377.1.1.34 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › FAM76 0.90 80.0 5.31e-01 100.0% 27.3%
3937741 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.90 76.0 7.05e-01 100.0% 75.0%
3397634 377.1.1.34 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › FAM76 0.89 76.0 6.08e-01 100.0% 50.0%
3425436 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 67.0 6.24e-01 100.0% 95.0%
3363073 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 66.0 6.38e-01 100.0% 82.9%
4031664 375.1.1.75 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF2197 0.75 57.0 5.35e-01 90.0% 97.5%
5042568 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 57.0 4.75e-01 90.0% 47.3%
4945257 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 64.0 5.18e-01 100.0% 98.3%
4367464 377.1.3.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › Zinc-binding subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.74 58.0 5.87e-01 100.0% 96.7%
3717167 376.1.5.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › AN1-like Zinc finger 0.73 59.0 5.52e-01 96.7% 75.0%
3393209 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.72 59.0 5.30e-01 100.0% 66.7%
5041606 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 53.0 4.39e-01 100.0% 58.5%
4027754 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.68 55.0 4.82e-01 100.0% 76.0%
5018523 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.68 54.0 4.28e-01 100.0% 44.3%
2641789 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.59 39.0 3.10e-01 96.7% 27.7%
3193128 4957.1.1.0 a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.53 37.0 2.50e-01 80.0% 78.7%
3355882 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 39.0 3.96e-01 90.0% 96.7%
3509877 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 39.0 3.72e-01 96.7% 75.0%
3583377 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.51 36.0 3.09e-01 96.7% 40.0%