←Back to structures

KX077179.1__ANT39917.1__Rhks_46__00046

Bact-Vir

KX077179.1__ANT39917.1__Rhks_46__00046

Identity

Accession:
KX077179 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodovulum_phage_vB_RhkS_P1

TaxID: 1873452

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-93
PDB
Domain cluster: rep: KT381864.1__ALF02048.1__vBThpSP1_009__00009__D25-78
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 4.44e-01 100.0% 52.4%
2yilA02 3.30.30.180 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.64 38.0 4.13e-01 96.8% 72.5%
7dklA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 52.0 4.41e-01 100.0% 81.6%
6n9gA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.53e-01 100.0% 90.0%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 3.80e-01 98.4% 51.1%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.60 42.0 4.02e-01 73.0% 73.2%
5znqA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 51.0 3.74e-01 100.0% 98.9%
2zxiA03 1.10.10.1800 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG/GidA 0.58 50.0 4.42e-01 100.0% 73.2%
2qh5B00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.58 37.0 2.49e-01 77.8% 16.0%
1qviA01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.58 43.0 3.62e-01 100.0% 45.2%
3nftA00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.57 41.0 2.73e-01 77.8% 41.6%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.76e-01 100.0% 55.2%
1fshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.11e-01 96.8% 93.6%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 48.0 3.32e-01 98.4% 34.7%
3c9gA01 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.55 40.0 3.25e-01 77.8% 65.9%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 41.0 3.84e-01 82.5% 75.0%
1uujA00 1.20.960.30 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.55 40.0 3.89e-01 100.0% 68.4%
1mhyD00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.54 44.0 2.66e-01 96.8% 45.7%
2y3mA02 3.30.1370.130 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 32.0 3.42e-01 92.1% 66.1%
7x0fA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.53 36.0 2.85e-01 71.4% 78.4%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.53 41.0 4.23e-01 93.7% 94.7%
5kfnA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 41.0 3.03e-01 88.9% 70.1%
1l7eA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 39.0 2.95e-01 93.7% 29.9%
3tthB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 45.0 3.38e-01 100.0% 68.3%
2cpdA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 33.0 3.16e-01 93.7% 52.0%
2jl8102 3.30.160.850 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 27.0 3.01e-01 73.0% 60.0%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.52 43.0 3.08e-01 98.4% 59.5%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 3.93e-01 100.0% 67.7%
2yx1A01 3.30.70.2580 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 31.0 3.11e-01 95.2% 54.5%
3l60A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.51 43.0 3.07e-01 100.0% 70.0%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.51 39.0 3.64e-01 82.5% 68.4%
2j0nB00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.51 41.0 3.11e-01 98.4% 67.9%
3tqvA01 3.90.1170.20 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain 0.51 40.0 3.30e-01 93.7% 65.4%
1u6gC00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.50 38.0 2.09e-01 96.8% 4.5%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4934384 101.1.2.947 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27234 0.67 55.0 5.08e-01 95.2% 78.8%
3837566 101.1.2.12 ↗ alpha arrays › HTH › HTH › winged helix domain › DEP 0.66 57.0 4.91e-01 100.0% 81.9%
3499511 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 4.73e-01 98.4% 92.7%
3223404 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 56.0 4.38e-01 98.4% 55.0%
4978228 305.2.1.0 ↗ a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) 0.62 38.0 3.81e-01 88.9% 58.5%
5080529 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.61 43.0 3.80e-01 96.8% 49.5%
3589191 142.1.1.10 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 0.61 42.0 4.12e-01 71.4% 82.9%
4022896 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 3.74e-01 100.0% 44.9%
3256424 101.1.2.381 ↗ alpha arrays › HTH › HTH › winged helix domain › UBR1-like_wing 0.58 49.0 4.28e-01 95.2% 62.1%
3988383 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.58 49.0 4.27e-01 96.8% 62.0%
3788152 171.1.1.0 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.58 41.0 3.26e-01 77.8% 49.0%
3296120 3922.1.1.126 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › XH 0.58 48.0 4.28e-01 100.0% 66.0%
3725361 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 49.0 4.44e-01 100.0% 73.3%
5014575 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 48.0 4.13e-01 100.0% 63.6%
3244217 101.1.2.506 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.57 49.0 3.98e-01 100.0% 50.4%
139834 4132.1.1.1 ↗ alpha bundles › IpaD-like › IpaD-like › IpaD-like › T3SS_TC 0.57 41.0 2.73e-01 77.8% 41.6%
3996957 101.1.2.506 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.57 46.0 4.02e-01 96.8% 61.9%
3426912 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.56 47.0 4.41e-01 98.4% 97.5%
3330811 101.1.1.339 ↗ alpha arrays › HTH › HTH › Three-helical HTH › XH 0.56 47.0 4.14e-01 100.0% 63.0%
184685 6051.5.1.1 ↗ alpha duplicates or obligate multimers › Docking domains in modular polyketide synthases › Class 3 N-terminal docking domain › Class 3 N-terminal docking domain › TubC_N 0.56 45.0 4.25e-01 100.0% 73.1%
4972963 882.1.1.4 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.56 40.0 3.34e-01 77.8% 67.5%
4012484 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.55 44.0 3.49e-01 96.8% 100.0%
3287283 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 47.0 3.99e-01 100.0% 59.1%
3703210 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 44.0 3.95e-01 98.4% 78.0%
3885544 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.54 32.0 3.33e-01 96.8% 63.3%
3581883 5048.1.1.0 ↗ alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like 0.54 46.0 3.39e-01 100.0% 57.2%
66784 304.120.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › DUF3195 0.54 40.0 3.95e-01 82.5% 83.8%
4611933 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 39.0 3.09e-01 82.5% 34.7%
4543273 304.36.1.1 ↗ a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.53 42.0 4.19e-01 87.3% 98.5%
4978597 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.53 37.0 2.66e-01 73.0% 36.8%
3257636 610.2.1.0 ↗ alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 0.53 43.0 3.72e-01 98.4% 80.9%
3420784 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 36.0 3.14e-01 100.0% 42.9%
5069719 306.3.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.53 40.0 3.64e-01 81.0% 62.4%
5047912 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.53 42.0 4.22e-01 87.3% 87.7%
3704488 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 3.68e-01 100.0% 58.3%
5023633 304.24.1.5 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N 0.52 46.0 4.43e-01 98.4% 87.1%
3602812 4143.1.1.0 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like 0.52 38.0 3.88e-01 77.8% 83.3%
5033846 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.52 44.0 3.70e-01 98.4% 73.0%
2604960 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.52 44.0 3.75e-01 96.8% 57.4%
4392601 304.36.1.1 ↗ a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.52 40.0 3.84e-01 84.1% 80.8%
3989567 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.51 40.0 4.07e-01 87.3% 88.3%
3609216 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 40.0 2.29e-01 90.5% 44.7%
3278082 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.51 38.0 3.91e-01 82.5% 91.7%
3502008 101.1.2.506 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.51 41.0 3.46e-01 93.7% 95.7%
3740080 109.4.1.548 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIP120 0.51 39.0 2.60e-01 100.0% 19.3%
5062471 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 37.0 3.08e-01 77.8% 46.4%
4598960 304.36.1.0 ↗ a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like 0.50 39.0 3.81e-01 87.3% 87.1%
3737988 109.4.1.1316 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf, HAT_PRP39_N, HAT_PRP39_C 0.50 40.0 2.34e-01 93.7% 9.5%