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KX077179.1__ANT39924.1__Rhks_53__00053

Bact-Vir

KX077179.1__ANT39924.1__Rhks_53__00053

Identity

Accession:
KX077179 ↗
Kingdom:
phage

Quality

92.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodovulum_phage_vB_RhkS_P1

TaxID: 1873452

Cluster

View cluster (22 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-136
PDB
Domain cluster: rep: BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00175__D95-204
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14301.13 best DUF4376 48.6 1.40e-12 99.1% 77.4%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 50.0 5.07e-01 92.4% 72.6%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 47.0 4.99e-01 91.4% 80.9%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 47.0 4.66e-01 92.4% 70.6%
1d8cA03 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.65 39.0 3.57e-01 78.1% 46.7%
3cxjA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.61 38.0 3.38e-01 88.6% 45.1%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 36.0 2.82e-01 75.2% 27.7%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 31.0 3.61e-01 74.3% 68.0%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.60 33.0 3.98e-01 82.9% 82.4%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 35.0 3.63e-01 81.0% 62.9%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 35.0 2.76e-01 72.4% 29.3%
6liuC02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 35.0 3.38e-01 81.0% 53.4%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 49.0 4.33e-01 91.4% 68.2%
2ebbA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.57 34.0 3.61e-01 80.0% 65.6%
4oloB00 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.56 31.0 3.45e-01 84.8% 66.7%
1auwA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.56 46.0 3.60e-01 100.0% 41.2%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 30.0 3.50e-01 73.3% 75.0%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 30.0 2.63e-01 76.2% 35.0%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.73e-01 87.6% 63.7%
2af6A01 3.30.70.3180 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 39.0 3.67e-01 77.1% 74.8%
1f02T00 4.10.820.10 Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain 0.53 32.0 3.87e-01 91.4% 92.4%
1usmA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.53 32.0 3.58e-01 81.0% 79.2%
4flnA02 3.20.190.20 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › 0.53 39.0 3.49e-01 77.1% 90.8%
7wu7501 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 44.0 4.20e-01 91.4% 80.2%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.53 26.0 3.23e-01 91.4% 78.0%
1jgsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.97e-01 89.5% 77.5%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.51 28.0 3.20e-01 77.1% 70.1%
5fq4A00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 39.0 2.58e-01 83.8% 92.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3985490 192.2.1.5 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.78 70.0 6.61e-01 95.2% 83.1%
3808578 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.75 49.0 5.70e-01 86.7% 94.6%
3482328 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.74 51.0 5.12e-01 93.3% 70.5%
3630462 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.73 52.0 4.72e-01 93.3% 55.0%
3783976 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.73 51.0 5.53e-01 91.4% 85.6%
3979390 192.2.1.5 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.72 65.0 6.17e-01 100.0% 83.2%
3298201 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.72 45.0 5.33e-01 82.9% 92.9%
3394225 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.72 51.0 4.97e-01 91.4% 67.0%
4662222 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.71 51.0 4.90e-01 93.3% 65.0%
3234976 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.71 51.0 5.02e-01 91.4% 70.0%
4410759 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.71 50.0 4.83e-01 91.4% 66.1%
4025655 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.71 50.0 5.28e-01 91.4% 81.1%
3790375 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.70 52.0 4.97e-01 93.3% 65.6%
3594965 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.70 50.0 4.53e-01 92.4% 55.7%
3771989 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.70 51.0 4.69e-01 93.3% 59.3%
4463557 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.70 51.0 5.32e-01 91.4% 83.2%
3785619 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.69 50.0 4.90e-01 91.4% 68.7%
5060418 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.69 49.0 4.69e-01 92.4% 64.2%
4948599 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.69 45.0 4.85e-01 91.4% 77.8%
3270487 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.69 48.0 4.78e-01 91.4% 69.1%
3229643 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.69 49.0 4.68e-01 91.4% 64.2%
3939311 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.67 48.0 4.80e-01 93.3% 70.9%
4029803 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.67 47.0 4.43e-01 91.4% 59.2%
3974474 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.66 36.0 3.91e-01 81.0% 62.2%
4259368 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.64 46.0 4.40e-01 92.4% 64.2%
4025072 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.64 46.0 4.50e-01 91.4% 67.8%
3718200 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.64 48.0 4.52e-01 91.4% 65.6%
3775826 4016.1.1.0 ↗ alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase 0.64 39.0 3.53e-01 91.4% 44.1%
3411883 604.1.1.63 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 0.63 40.0 3.87e-01 91.4% 55.8%
3970671 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.63 36.0 4.19e-01 82.9% 80.0%
3710532 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 50.0 5.00e-01 91.4% 83.8%
4011414 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.62 46.0 3.58e-01 92.4% 37.7%
5035888 304.19.1.1 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.62 38.0 4.20e-01 84.8% 76.5%
3586018 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 45.0 4.14e-01 91.4% 58.6%
3177612 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 51.0 4.82e-01 91.4% 80.8%
3457354 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 50.0 4.48e-01 91.4% 69.7%
3859550 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.59 45.0 4.32e-01 92.4% 70.8%
3594109 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.59 50.0 4.43e-01 91.4% 71.3%
4934213 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 41.0 3.79e-01 100.0% 58.5%
3409703 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 49.0 4.59e-01 91.4% 76.2%
3696633 3393.1.1.2 ↗ extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › Kinesin_assoc 0.58 43.0 4.49e-01 87.6% 85.3%
4403516 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 49.0 4.66e-01 91.4% 80.6%
3163830 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.56 36.0 3.52e-01 100.0% 57.5%
3614763 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.56 41.0 3.96e-01 92.4% 67.5%
3599620 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 47.0 4.60e-01 91.4% 87.0%
3547409 604.1.1.153 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455 0.55 42.0 3.35e-01 91.4% 42.0%
3717247 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.54 46.0 3.55e-01 89.5% 51.4%
3304698 320.4.1.0 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain 0.54 42.0 3.99e-01 84.8% 98.5%
3261541 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.54 37.0 3.61e-01 85.7% 63.5%
4973868 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.54 45.0 4.35e-01 90.5% 90.8%
4026519 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.53 41.0 3.78e-01 100.0% 64.4%
5061627 5073.1.2.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain 0.52 47.0 3.65e-01 99.0% 60.4%
3391939 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.52 40.0 3.93e-01 84.8% 74.8%
4044429 1197.1.1.1 ↗ alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf 0.52 39.0 3.16e-01 83.8% 77.4%
3509936 604.29.1.1 ↗ alpha bundles › Spectrin repeat-like › Trehalose-6-phosphate phosphatase N-terminal helical bundle › Trehalose-6-phosphate phosphatase N-terminal helical bundle › T6PP_N 0.52 36.0 3.60e-01 95.2% 69.1%
4033043 616.1.1.41 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 0.51 36.0 3.88e-01 83.8% 84.4%
3538512 3892.1.1.0 ↗ alpha bundles › Transhydrogeanse domain II › Transhydrogeanse domain II › Transhydrogeanse domain II 0.51 37.0 3.20e-01 75.2% 50.0%
3498627 7015.1.1.1 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.51 44.0 3.31e-01 100.0% 39.2%
4278105 633.23.1.17 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA 0.50 45.0 3.61e-01 100.0% 51.2%
3969496 3226.1.1.0 ↗ alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA 0.50 44.0 2.98e-01 99.0% 67.8%